Factsheet for VIT_13s0067g00710.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	87.62	88.5
GSMUA_Achr1P11330_001	Banana	plasma membrane	83.66	84.5
VIT_08s0040g00600.t01	Wine grape	cytosol	83.17	83.17
Os01t0938900-02	Rice	nucleus	81.19	81.19
TraesCS1D01G236500.1	Wheat	cytosol	81.19	80.0
TraesCS1B01G248000.1	Wheat	golgi, plastid, unclear	80.2	79.02
Os05t0373700-01	Rice	extracellular, golgi, plasma membrane, plastid	79.7	78.54
HORVU1Hr1G057970.2	Barley	nucleus	80.69	77.99
Bra038716.1-P	Field mustard	cytosol	50.99	77.44
AT3G12390.1	Thale cress	cytosol	76.24	75.86
Zm00001d047477_P001	Maize	plastid	76.24	75.86
EES15306	Sorghum	nucleus	77.72	75.85
CDX69622	Canola	cytosol	77.23	75.73
Bra008797.1-P	Field mustard	cytosol	77.72	75.48
CDY00769	Canola	cytosol	74.75	75.12
CDX73823	Canola	cytosol	74.75	75.12
AT5G13850.1	Thale cress	cytosol	75.74	75.0
TraesCS4B01G154200.1	Wheat	nucleus	76.24	74.76
Zm00001d029173_P004	Maize	nucleus	76.24	74.4
CDY71160	Canola	nucleus	74.26	74.26
EER94856	Sorghum	nucleus	75.74	73.91
CDY50549	Canola	nucleus	73.76	73.76
Zm00001d049830_P002	Maize	extracellular	75.74	73.56
CDY08433	Canola	plasma membrane	73.76	73.04
Bra034757.1-P	Field mustard	cytosol	73.76	73.04
Bra001450.1-P	Field mustard	cytosol	68.32	73.02
CDY42148	Canola	nucleus	73.27	72.91
TraesCS4A01G138000.1	Wheat	plastid, unclear	74.26	72.12
TraesCS4D01G164400.1	Wheat	nucleus	73.76	71.98
CDY09831	Canola	nucleus	72.28	70.87
TraesCS3A01G474500.1	Wheat	nucleus	66.34	70.53
TraesCS3B01G518000.1	Wheat	cytosol, nucleus, plastid	69.8	69.46
TraesCS3B01G518300.1	Wheat	cytosol, nucleus, plastid	67.82	68.84
TraesCS3D01G470600.2	Wheat	cytosol	65.35	68.75
TraesCS3B01G518200.1	Wheat	cytosol	44.55	68.18
TraesCS3A01G474600.1	Wheat	cytosol	66.83	67.84
TraesCS3B01G517400.1	Wheat	cytosol	66.34	67.34
HORVU3Hr1G102520.6	Barley	cytosol, nucleus	68.32	66.67
TraesCS3A01G474200.1	Wheat	nucleus	65.35	66.67
TraesCS3D01G470500.1	Wheat	cytosol, nucleus, plastid	61.88	66.49
TraesCSU01G140100.1	Wheat	nucleus	65.35	66.33
HORVU2Hr1G015260.1	Barley	cytosol, nucleus, plastid	63.37	63.37
TraesCS3B01G518400.1	Wheat	cytosol	61.39	63.27
VIT_16s0098g00830.t01	Wine grape	cytosol, nucleus, plastid	65.35	62.86
TraesCS3A01G474800.1	Wheat	cytosol, nucleus, plastid	60.89	60.89
TraesCSU01G140000.1	Wheat	nucleus	58.91	58.62
TraesCS3B01G517500.1	Wheat	cytosol, golgi, nucleus	57.43	51.56

Protein Annotations

Gene3D:1.10.8.10	EntrezGene:100245825	wikigene:100245825	MapMan:19.1.2.1.1	Gene3D:2.20.70.30	ProteinID:CBI40611
ProteinID:CBI40611.3	UniProt:D7UCZ6	InterPro:EGD2/NACA	EMBL:FN596756	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005854	InterPro:IPR002715	InterPro:IPR038187	EntrezGene:LOC100245825
wikigene:LOC100245825	InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849	PIRSF:PIRSF015901	PFscan:PS51151
PANTHER:PTHR21713	PANTHER:PTHR21713:SF16	SMART:SM01407	TIGR:TC51814	UniParc:UPI00019861D4	ArrayExpress:VIT_13s0067g00710
EnsemblPlantsGene:VIT_13s0067g00710	EnsemblPlants:VIT_13s0067g00710.t01	unigene:Vvi.1699	RefSeq:XP_002266597	RefSeq:XP_002266597.1	SEG:seg

Description

No Description!

Coordinates

chr13_random:-:386277..389908

Molecular Weight (calculated)

22028.5 Da

IEP (calculated)

4.097

GRAVY (calculated)

-0.751

Length

202 amino acids

Sequence
(BLAST)

001: MTAQTQEELL AAHLEQQKIN PDEPVVEEED DDDDEDDEDD KDEDDVEGEQ GGDASGRSKQ SRSEKKSRKA MLKLGMKPIP GVSRVTVKKS KNILFVISKP
101: DVFKSPTSDT YVIFGEAKIE DLSSQLQTQA AEQFKAPDLS NVIAKPEASS MAQDDEDVDE TGVEPKDIEL VMTQAGVSRS KAVKALKAAD GDIVSAIMEL
201: TN

Best Arabidopsis Sequence Match ( AT3G12390.1 )
(BLAST)

001: MTTEEKEILA AKLEEQKIDL DKPEVEDDDD NEDDDSDDDD KDDDEADGLD GEAGGKSKQS RSEKKSRKAM LKLGMKPITG VSRVTVKKSK NILFVISKPD
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT

Arabidopsis Description

Nascent polypeptide-associated complex subunit alpha-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.