Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G517400.1 | Wheat | cytosol | 64.44 | 72.86 |
| TraesCS3B01G518300.1 | Wheat | cytosol, nucleus, plastid | 58.22 | 65.83 |
| TraesCS3B01G518000.1 | Wheat | cytosol, nucleus, plastid | 59.11 | 65.52 |
| TraesCSU01G140000.1 | Wheat | nucleus | 52.89 | 58.62 |
| Os01t0938900-02 | Rice | nucleus | 52.44 | 58.42 |
| TraesCS3B01G518400.1 | Wheat | cytosol | 50.22 | 57.65 |
| VIT_13s0067g00710.t01 | Wine grape | nucleus | 51.56 | 57.43 |
| GSMUA_Achr10P... | Banana | nucleus | 49.78 | 56.0 |
| TraesCS3B01G518200.1 | Wheat | cytosol | 32.44 | 55.3 |
| Solyc10g081030.1.1 | Tomato | nucleus | 48.89 | 55.28 |
| Solyc10g078150.1.1 | Tomato | nucleus | 48.0 | 54.55 |
| KRH66664 | Soybean | endoplasmic reticulum | 48.89 | 54.19 |
| TraesCS1B01G248000.1 | Wheat | golgi, plastid, unclear | 49.33 | 54.15 |
| KRH66666 | Soybean | endoplasmic reticulum | 47.56 | 54.04 |
| VIT_08s0040g00600.t01 | Wine grape | cytosol | 48.0 | 53.47 |
| CDY00769 | Canola | cytosol | 47.56 | 53.23 |
| CDX73823 | Canola | cytosol | 47.56 | 53.23 |
| CDY42148 | Canola | nucleus | 48.0 | 53.2 |
| PGSC0003DMT400018552 | Potato | nucleus | 46.67 | 53.03 |
| GSMUA_Achr1P11330_001 | Banana | plasma membrane | 47.11 | 53.0 |
| KRG95031 | Soybean | endoplasmic reticulum | 47.11 | 52.48 |
| AT3G12390.1 | Thale cress | cytosol | 47.11 | 52.22 |
| CDY08433 | Canola | plasma membrane | 46.67 | 51.47 |
| Bra034757.1-P | Field mustard | cytosol | 46.67 | 51.47 |
| CDX69622 | Canola | cytosol | 47.11 | 51.46 |
| Bra008797.1-P | Field mustard | cytosol | 47.56 | 51.44 |
| AT5G13850.1 | Thale cress | cytosol | 45.78 | 50.49 |
| Bra001450.1-P | Field mustard | cytosol | 42.22 | 50.26 |
| KRG95032 | Soybean | nucleus | 45.78 | 50.24 |
| TraesCS4B01G154200.1 | Wheat | nucleus | 44.89 | 49.03 |
| CDY50549 | Canola | nucleus | 43.56 | 48.51 |
| CDY09831 | Canola | nucleus | 44.0 | 48.06 |
| CDY71160 | Canola | nucleus | 43.11 | 48.02 |
| PGSC0003DMT400072220 | Potato | cytosol, endoplasmic reticulum, nucleus | 42.22 | 47.5 |
| GSMUA_Achr5P17540_001 | Banana | endoplasmic reticulum, extracellular, golgi | 47.56 | 44.77 |
| Bra038716.1-P | Field mustard | cytosol | 26.22 | 44.36 |
| TraesCS4B01G347400.1 | Wheat | nucleus | 36.89 | 37.73 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G517500.1 | EnsemblPlantsGene:TraesCS3B01G517500 | Gene3D:2.20.70.30 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005854 | InterPro:EGD2/NACA | InterPro:IPR002715 | InterPro:IPR038187 | InterPro:NAC_A/B_dom_sf |
| InterPro:Nas_poly-pep-assoc_cplx_dom | PANTHER:PTHR21713 | PANTHER:PTHR21713:SF16 | PFAM:PF01849 | PFscan:PS51151 | SEG:seg |
| SMART:SM01407 | MapMan:19.1.2.1.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:760490095..760493055
Molecular Weight (calculated)
25165.3 Da
IEP (calculated)
4.214
GRAVY (calculated)
-0.580
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVAELLRAQ LEEQRIEGDE PILEEEDDDD EDDDEDEDEK DDDRVEGGDA GGSSRQSRSE KKSRKAMEKL DMKAIIGVSR VTIKKSKNVV YVLSKPDVFK
101: SSQSDTYVMF GEIKVEDPST ELQTQAAEQF KAPGLSSVVS KGEPSVAAAQ DDEEVDDTDV DKKASLLKNT GRLELLRFHT ISRDDAFPYA FHSYFIVDCI
201: VYCHISLFLP LSLHLPISLP PSLYP
101: SSQSDTYVMF GEIKVEDPST ELQTQAAEQF KAPGLSSVVS KGEPSVAAAQ DDEEVDDTDV DKKASLLKNT GRLELLRFHT ISRDDAFPYA FHSYFIVDCI
201: VYCHISLFLP LSLHLPISLP PSLYP
001: MTTEEKEILA AKLEEQKIDL DKPEVEDDDD NEDDDSDDDD KDDDEADGLD GEAGGKSKQS RSEKKSRKAM LKLGMKPITG VSRVTVKKSK NILFVISKPD
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT
Arabidopsis Description
Nascent polypeptide-associated complex subunit alpha-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHG9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.