CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95032	Soybean	nucleus	91.58	90.24
KRH66664	Soybean	endoplasmic reticulum	89.6	89.16
KRH66666	Soybean	endoplasmic reticulum	85.64	87.37
GSMUA_Achr10P...	Banana	nucleus	81.19	82.0
Solyc10g078150.1.1	Tomato	nucleus	79.21	80.81
GSMUA_Achr1P11330_001	Banana	plasma membrane	79.21	80.0
Solyc10g081030.1.1	Tomato	nucleus	78.71	79.9
PGSC0003DMT400018552	Potato	nucleus	77.72	79.29
AT3G12390.1	Thale cress	cytosol	79.21	78.82
VIT_08s0040g00600.t01	Wine grape	cytosol	78.22	78.22
HORVU1Hr1G057970.2	Barley	nucleus	79.7	77.03
Os01t0938900-02	Rice	nucleus	76.73	76.73
TraesCS1D01G236500.1	Wheat	cytosol	77.72	76.59
Os05t0373700-01	Rice	extracellular, golgi, plasma membrane, plastid	77.23	76.1
TraesCS1B01G248000.1	Wheat	golgi, plastid, unclear	76.73	75.61
EES15306	Sorghum	nucleus	76.24	74.4
CDY50549	Canola	nucleus	74.26	74.26
PGSC0003DMT400072220	Potato	cytosol, endoplasmic reticulum, nucleus	73.27	74.0
AT5G13850.1	Thale cress	cytosol	74.26	73.53
CDY71160	Canola	nucleus	73.27	73.27
Zm00001d029173_P004	Maize	nucleus	74.75	72.95
Zm00001d047477_P001	Maize	plastid	72.77	72.41
TraesCS4D01G164400.1	Wheat	nucleus	73.76	71.98
CDX73823	Canola	cytosol	71.29	71.64
CDY00769	Canola	cytosol	71.29	71.64
EER94856	Sorghum	nucleus	73.27	71.5
Bra038716.1-P	Field mustard	cytosol	47.03	71.43
TraesCS4B01G154200.1	Wheat	nucleus	72.77	71.36
Zm00001d049830_P002	Maize	extracellular	73.27	71.15
CDY08433	Canola	plasma membrane	71.78	71.08
Bra034757.1-P	Field mustard	cytosol	71.78	71.08
CDY42148	Canola	nucleus	71.29	70.94
CDY09831	Canola	nucleus	71.78	70.39
Bra001450.1-P	Field mustard	cytosol	65.35	69.84
TraesCS4A01G138000.1	Wheat	plastid, unclear	71.78	69.71
TraesCS3B01G518300.1	Wheat	cytosol, nucleus, plastid	68.32	69.35
TraesCS3A01G474500.1	Wheat	nucleus	64.85	68.95
CDX69622	Canola	cytosol	70.3	68.93
Bra008797.1-P	Field mustard	cytosol	70.3	68.27
TraesCS3D01G470600.2	Wheat	cytosol	64.85	68.23
TraesCS3B01G518000.1	Wheat	cytosol, nucleus, plastid	67.82	67.49
TraesCS3A01G474600.1	Wheat	cytosol	65.84	66.83
TraesCS3A01G474200.1	Wheat	nucleus	65.35	66.67
TraesCS3D01G470500.1	Wheat	cytosol, nucleus, plastid	60.89	65.43
TraesCS3B01G518200.1	Wheat	cytosol	42.08	64.39
HORVU3Hr1G102520.6	Barley	cytosol, nucleus	65.84	64.25
TraesCS3B01G517400.1	Wheat	cytosol	62.87	63.82
TraesCSU01G140100.1	Wheat	nucleus	62.87	63.82
HORVU2Hr1G015260.1	Barley	cytosol, nucleus, plastid	62.87	62.87
TraesCS3B01G518400.1	Wheat	cytosol	60.89	62.76
KRH53644	Soybean	endoplasmic reticulum	65.35	59.19
TraesCS3A01G474800.1	Wheat	cytosol, nucleus, plastid	57.92	57.92
KRH64285	Soybean	endoplasmic reticulum	63.37	57.4
KRH64284	Soybean	endoplasmic reticulum	61.88	57.34
KRH53645	Soybean	endoplasmic reticulum	62.87	56.44
TraesCSU01G140000.1	Wheat	nucleus	55.94	55.66
TraesCS3B01G517500.1	Wheat	cytosol, golgi, nucleus	52.48	47.11

Protein Annotations

Gene3D:1.10.8.10	EntrezGene:100791446	MapMan:19.1.2.1.1	Gene3D:2.20.70.30	EMBL:ACUP02012071	InterPro:EGD2/NACA
EnsemblPlantsGene:GLYMA_19G125400	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005854
UniProt:I1N8M4	InterPro:IPR002715	InterPro:IPR038187	EnsemblPlants:KRG95031	ProteinID:KRG95031	ProteinID:KRG95031.1
InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849	PIRSF:PIRSF015901	PFscan:PS51151	PANTHER:PTHR21713
PANTHER:PTHR21713:SF16	SMART:SM01407	UniParc:UPI000233E5DA	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr19:-:38371065..38373945

Molecular Weight (calculated)

21999.4 Da

IEP (calculated)

4.158

GRAVY (calculated)

-0.721

Length

202 amino acids

Sequence
(BLAST)

001: MTAQTQEELL AQHLEQQKIH DGEPVVEDDD DEEEDDDDDD DEDDDHAEGL EGDASGRSKQ TRSEKKSRKA MLKLGMKPVT GVSRVTVKKS KNILFVISKP
101: DVFKSPTSET YIIFGEAKIE DLSSQLQTQA AEQFKAPNLS NVGLKPESSA VAQDDEEVDE AGVDPKDIEL VMTQAGVSRP KAVKALKAAS GDIVAAIMEL
201: TN

Best Arabidopsis Sequence Match ( AT3G12390.1 )
(BLAST)

001: MTTEEKEILA AKLEEQKIDL DKPEVEDDDD NEDDDSDDDD KDDDEADGLD GEAGGKSKQS RSEKKSRKAM LKLGMKPITG VSRVTVKKSK NILFVISKPD
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT

Arabidopsis Description

Nascent polypeptide-associated complex subunit alpha-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.