Factsheet for TraesCS3D01G470600.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G518300.1	Wheat	cytosol, nucleus, plastid	93.75	90.45
TraesCS3A01G474600.1	Wheat	cytosol	91.67	88.44
HORVU2Hr1G015260.1	Barley	cytosol, nucleus, plastid	81.25	77.23
TraesCS3D01G470500.1	Wheat	cytosol, nucleus, plastid	74.48	76.06
KRH66666	Soybean	endoplasmic reticulum	68.75	66.67
GSMUA_Achr10P...	Banana	nucleus	69.27	66.5
Os01t0938900-02	Rice	nucleus	69.27	65.84
VIT_13s0067g00710.t01	Wine grape	nucleus	68.75	65.35
GSMUA_Achr1P11330_001	Banana	plasma membrane	67.71	65.0
VIT_08s0040g00600.t01	Wine grape	cytosol	68.23	64.85
KRG95031	Soybean	endoplasmic reticulum	68.23	64.85
Solyc10g081030.1.1	Tomato	nucleus	67.19	64.82
KRH66664	Soybean	endoplasmic reticulum	67.71	64.04
TraesCS1D01G236500.1	Wheat	cytosol	67.71	63.41
Solyc10g078150.1.1	Tomato	nucleus	65.1	63.13
PGSC0003DMT400018552	Potato	nucleus	64.06	62.12
AT3G12390.1	Thale cress	cytosol	65.1	61.58
KRG95032	Soybean	nucleus	65.1	60.98
CDY42148	Canola	nucleus	64.06	60.59
CDY00769	Canola	cytosol	63.02	60.2
CDX73823	Canola	cytosol	63.02	60.2
AT5G13850.1	Thale cress	cytosol	63.54	59.8
Bra001450.1-P	Field mustard	cytosol	58.33	59.26
CDX69622	Canola	cytosol	63.54	59.22
CDY08433	Canola	plasma membrane	62.5	58.82
Bra034757.1-P	Field mustard	cytosol	62.5	58.82
CDY09831	Canola	nucleus	63.02	58.74
Bra008797.1-P	Field mustard	cytosol	63.54	58.65
PGSC0003DMT400072220	Potato	cytosol, endoplasmic reticulum, nucleus	60.94	58.5
Bra038716.1-P	Field mustard	cytosol	40.1	57.89
TraesCS4D01G164400.1	Wheat	nucleus	61.46	57.0
CDY71160	Canola	nucleus	59.9	56.93
CDY50549	Canola	nucleus	59.9	56.93
GSMUA_Achr5P17540_001	Banana	endoplasmic reticulum, extracellular, golgi	65.62	52.72
TraesCS4D01G342400.1	Wheat	nucleus	54.69	47.3

Protein Annotations

EnsemblPlants:TraesCS3D01G470600.2	EnsemblPlantsGene:TraesCS3D01G470600	Gene3D:1.10.8.10	Gene3D:2.20.70.30	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005854	InterPro:EGD2/NACA	InterPro:IPR002715	InterPro:IPR038187
InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PANTHER:PTHR21713	PANTHER:PTHR21713:SF16	PFAM:PF01849	PFscan:PS51151
PIRSF:PIRSF015901	SEG:seg	SMART:SM01407	MapMan:19.1.2.1.1	:	:

Description

No Description!

Coordinates

chr3D:-:572507731..572510389

Molecular Weight (calculated)

21264.6 Da

IEP (calculated)

4.163

GRAVY (calculated)

-0.762

Length

192 amino acids

Sequence
(BLAST)

001: MTVAELLRAQ LEEHNIEDDD DDDEYNDEDE DEKDDDDVEG GDASGRSRQT RSEKKSRKAM EKLGMKVITG VNRVTIKKSK TVTFVLSKPD VFKSSHSETY
101: VIIGEIKFED LNTELQTQAA EQFKAPGPSR VNSMGEPSVA AVQDDEEVDE TGVDKKDVEL MMMQASVSRS RAVEALKAAD GDIVSAIMEL TN

Best Arabidopsis Sequence Match ( AT3G12390.1 )
(BLAST)

001: MTTEEKEILA AKLEEQKIDL DKPEVEDDDD NEDDDSDDDD KDDDEADGLD GEAGGKSKQS RSEKKSRKAM LKLGMKPITG VSRVTVKKSK NILFVISKPD
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT

Arabidopsis Description

Nascent polypeptide-associated complex subunit alpha-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.