Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P11330_001 | Banana | plasma membrane | 69.46 | 83.0 |
| GSMUA_Achr10P... | Banana | nucleus | 67.36 | 80.5 |
| Os01t0938900-02 | Rice | nucleus | 64.02 | 75.74 |
| Os05t0373700-01 | Rice | extracellular, golgi, plasma membrane, plastid | 63.6 | 74.15 |
| AT3G12390.1 | Thale cress | cytosol | 61.92 | 72.91 |
| TraesCS1D01G236500.1 | Wheat | cytosol | 62.34 | 72.68 |
| TraesCS1B01G248000.1 | Wheat | golgi, plastid, unclear | 62.34 | 72.68 |
| HORVU1Hr1G057970.2 | Barley | nucleus | 62.34 | 71.29 |
| TraesCS3A01G474500.1 | Wheat | nucleus | 56.49 | 71.05 |
| EES15306 | Sorghum | nucleus | 61.09 | 70.53 |
| Zm00001d047477_P001 | Maize | plastid | 59.0 | 69.46 |
| Bra038716.1-P | Field mustard | cytosol | 38.49 | 69.17 |
| TraesCS4B01G154200.1 | Wheat | nucleus | 59.41 | 68.93 |
| CDY50549 | Canola | nucleus | 58.16 | 68.81 |
| CDX73823 | Canola | cytosol | 57.74 | 68.66 |
| CDY00769 | Canola | cytosol | 57.74 | 68.66 |
| AT5G13850.1 | Thale cress | cytosol | 58.58 | 68.63 |
| EER94856 | Sorghum | nucleus | 59.41 | 68.6 |
| TraesCS4D01G164400.1 | Wheat | nucleus | 59.41 | 68.6 |
| CDY09831 | Canola | nucleus | 59.0 | 68.45 |
| CDY71160 | Canola | nucleus | 57.74 | 68.32 |
| Zm00001d049830_P002 | Maize | extracellular | 59.41 | 68.27 |
| Bra001450.1-P | Field mustard | cytosol | 53.97 | 68.25 |
| Zm00001d029173_P004 | Maize | nucleus | 59.0 | 68.12 |
| CDX69622 | Canola | cytosol | 58.58 | 67.96 |
| Bra008797.1-P | Field mustard | cytosol | 59.0 | 67.79 |
| TraesCS4A01G138000.1 | Wheat | plastid, unclear | 58.58 | 67.31 |
| TraesCS3B01G518000.1 | Wheat | cytosol, nucleus, plastid | 56.9 | 67.0 |
| TraesCS3A01G474200.1 | Wheat | nucleus | 55.23 | 66.67 |
| HORVU3Hr1G102520.6 | Barley | cytosol, nucleus | 57.32 | 66.18 |
| Bra034757.1-P | Field mustard | cytosol | 56.49 | 66.18 |
| CDY08433 | Canola | plasma membrane | 56.49 | 66.18 |
| CDY42148 | Canola | nucleus | 56.07 | 66.01 |
| TraesCS3B01G518300.1 | Wheat | cytosol, nucleus, plastid | 54.81 | 65.83 |
| TraesCS3B01G517400.1 | Wheat | cytosol | 54.81 | 65.83 |
| TraesCS3D01G470600.2 | Wheat | cytosol | 52.72 | 65.62 |
| TraesCSU01G140100.1 | Wheat | nucleus | 53.56 | 64.32 |
| TraesCS3D01G470500.1 | Wheat | cytosol, nucleus, plastid | 49.79 | 63.3 |
| TraesCS3B01G518200.1 | Wheat | cytosol | 34.73 | 62.88 |
| TraesCS3A01G474600.1 | Wheat | cytosol | 52.3 | 62.81 |
| HORVU2Hr1G015260.1 | Barley | cytosol, nucleus, plastid | 52.3 | 61.88 |
| GSMUA_Achr1P06350_001 | Banana | cytosol | 53.97 | 60.28 |
| TraesCS3B01G518400.1 | Wheat | cytosol | 48.95 | 59.69 |
| TraesCS3A01G474800.1 | Wheat | cytosol, nucleus, plastid | 48.95 | 57.92 |
| TraesCSU01G140000.1 | Wheat | nucleus | 46.44 | 54.68 |
| TraesCS3B01G517500.1 | Wheat | cytosol, golgi, nucleus | 44.77 | 47.56 |
| GSMUA_Achr5P20310_001 | Banana | mitochondrion | 39.33 | 47.47 |
| GSMUA_Achr11P... | Banana | cytosol | 28.45 | 41.21 |
Protein Annotations
| Gene3D:1.10.8.10 | MapMan:19.1.2.1.1 | Gene3D:2.20.70.30 | InterPro:EGD2/NACA | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005854 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSMUA_Achr5G17540_001 |
| EnsemblPlants:GSMUA_Achr5P17540_001 | EnsemblPlants:GSMUA_Achr5T17540_001 | InterPro:IPR002715 | InterPro:IPR038187 | UniProt:M0SZD3 | InterPro:NAC_A/B_dom_sf |
| InterPro:Nas_poly-pep-assoc_cplx_dom | PFAM:PF01849 | PIRSF:PIRSF015901 | PFscan:PS51151 | PANTHER:PTHR21713 | PANTHER:PTHR21713:SF16 |
| SMART:SM01407 | TMHMM:TMhelix | UniParc:UPI000294B224 | SEG:seg | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G17540_001]
Coordinates
chr5:-:17951352..17953739
Molecular Weight (calculated)
26820.7 Da
IEP (calculated)
4.248
GRAVY (calculated)
-0.306
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MFYCLILYFY LIFTSVNHMF IYSWCHIAQM NSNIIILLPF TLFFEVSDIR DQFFHAFLQP DEPIVEEDDD DEDDEDDDDK DDDVEGQAGD AAGRSKQSRS
101: EKKSRKAMLK LGMKPIPGVS RVTVKKSKNI LFVISKPDVF KSPTSDTYVI FGEAKIEDLS SQLQTQAAEQ FKAPDLSHVI SKPETSAMAQ DDEEVDETGV
201: EPKDIELVMT QAGVSRSKAV KALKAADGDI VTAIMELTN
101: EKKSRKAMLK LGMKPIPGVS RVTVKKSKNI LFVISKPDVF KSPTSDTYVI FGEAKIEDLS SQLQTQAAEQ FKAPDLSHVI SKPETSAMAQ DDEEVDETGV
201: EPKDIELVMT QAGVSRSKAV KALKAADGDI VTAIMELTN
001: MTTEEKEILA AKLEEQKIDL DKPEVEDDDD NEDDDSDDDD KDDDEADGLD GEAGGKSKQS RSEKKSRKAM LKLGMKPITG VSRVTVKKSK NILFVISKPD
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT
Arabidopsis Description
Nascent polypeptide-associated complex subunit alpha-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHG9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.