Factsheet for TraesCS4A01G138000.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, unclear
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 22160430
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G164400.1	Wheat	nucleus	87.02	87.44
TraesCS4B01G154200.1	Wheat	nucleus	84.62	85.44
EER94856	Sorghum	nucleus	80.77	81.16
EES15306	Sorghum	nucleus	79.81	80.19
Zm00001d047477_P001	Maize	plastid	77.88	79.8
Zm00001d029173_P004	Maize	nucleus	79.33	79.71
Zm00001d049830_P002	Maize	extracellular	78.85	78.85
GSMUA_Achr1P11330_001	Banana	plasma membrane	72.12	75.0
GSMUA_Achr10P...	Banana	nucleus	71.63	74.5
VIT_13s0067g00710.t01	Wine grape	nucleus	72.12	74.26
KRH66664	Soybean	endoplasmic reticulum	72.12	73.89
Solyc10g081030.1.1	Tomato	nucleus	70.67	73.87
Solyc10g078150.1.1	Tomato	nucleus	69.71	73.23
PGSC0003DMT400018552	Potato	nucleus	69.23	72.73
AT3G12390.1	Thale cress	cytosol	70.67	72.41
VIT_08s0040g00600.t01	Wine grape	cytosol	69.71	71.78
KRG95031	Soybean	endoplasmic reticulum	69.71	71.78
KRH66666	Soybean	endoplasmic reticulum	68.27	71.72
CDY50549	Canola	nucleus	69.23	71.29
CDY00769	Canola	cytosol	68.75	71.14
CDX73823	Canola	cytosol	68.75	71.14
AT5G13850.1	Thale cress	cytosol	69.71	71.08
CDY71160	Canola	nucleus	68.75	70.79
KRG95032	Soybean	nucleus	69.71	70.73
Bra038716.1-P	Field mustard	cytosol	45.19	70.68
Bra001450.1-P	Field mustard	cytosol	63.94	70.37
Bra034757.1-P	Field mustard	cytosol	68.27	69.61
CDY08433	Canola	plasma membrane	68.27	69.61
CDY42148	Canola	nucleus	66.83	68.47
PGSC0003DMT400072220	Potato	cytosol, endoplasmic reticulum, nucleus	64.9	67.5
CDY09831	Canola	nucleus	66.83	67.48
CDX69622	Canola	cytosol	65.87	66.5
Bra008797.1-P	Field mustard	cytosol	65.87	65.87
TraesCS3A01G474500.1	Wheat	nucleus	58.65	64.21
TraesCS3A01G474200.1	Wheat	nucleus	56.73	59.6
GSMUA_Achr5P17540_001	Banana	endoplasmic reticulum, extracellular, golgi	67.31	58.58
TraesCS3A01G474600.1	Wheat	cytosol	55.77	58.29
TraesCS3A01G474800.1	Wheat	cytosol, nucleus, plastid	52.88	54.46
TraesCS5A01G516100.1	Wheat	nucleus	57.21	53.6
TraesCS3A01G474900.1	Wheat	cytosol	21.63	31.91

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.1.2.1.1	Gene3D:2.20.70.30	ncoils:Coil	InterPro:EGD2/NACA	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005854	InterPro:IPR002715	InterPro:IPR038187
InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849	PIRSF:PIRSF015901	PFscan:PS51151	PANTHER:PTHR21713
PANTHER:PTHR21713:SF8	SMART:SM01407	EnsemblPlantsGene:TraesCS4A01G138000	EnsemblPlants:TraesCS4A01G138000.1	TIGR:cd14358	SEG:seg

Description

No Description!

Coordinates

chr4A:+:201708627..201712138

Molecular Weight (calculated)

22616.8 Da

IEP (calculated)

3.994

GRAVY (calculated)

-0.762

Length

208 amino acids

Sequence
(BLAST)

001: MTAQTAEELA AQIEQEQLEA KKTEAEEVVV EDDDDDDDDN DDDDDDDDND DLDGQEGDAS GKSKQSRSEK KSRKAMLKLG MKSITGVSRV TVKKSKNILF
101: VISKPDVFKS PNSDTYVIFG EAKIEDLSSQ LQSQAAEQFK APDLSQMISS PEASGVEHDD NEVVNDEGVE PKDIELVMTQ AGVSRAKAVR ALKSANGDIV
201: TAIMEVTT

Best Arabidopsis Sequence Match ( AT5G13850.1 )
(BLAST)

001: MTAEQKVELA AKLEEQKIDL DKPEVEDDDD NDEDDSEDDD EAEGHDGEAG GRSKQSRSEK KSRKAMLKLG MKPITGVSRV TVKKSKNILF VISKPDVFKS
101: PASDTYVIFG EAKIEDLSSQ LQSQAAEQFK APNLSNVISQ GETSSAATAA AVQDDDDEEV DEEGVEPKDI ELVMTQAGVS KPRAVKALKL ANGDIVSAIM
201: ELTT

Arabidopsis Description

NACA3Nascent polypeptide-associated complex subunit alpha-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6ICZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.