CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95031	Soybean	endoplasmic reticulum	89.16	89.6
KRG95032	Soybean	nucleus	88.18	87.32
KRH66666	Soybean	endoplasmic reticulum	81.77	83.84
GSMUA_Achr10P...	Banana	nucleus	79.31	80.5
GSMUA_Achr1P11330_001	Banana	plasma membrane	78.82	80.0
Solyc10g081030.1.1	Tomato	nucleus	77.83	79.4
Solyc10g078150.1.1	Tomato	nucleus	76.85	78.79
VIT_08s0040g00600.t01	Wine grape	cytosol	77.34	77.72
Os01t0938900-02	Rice	nucleus	77.34	77.72
TraesCS1D01G236500.1	Wheat	cytosol	78.33	77.56
TraesCS1B01G248000.1	Wheat	golgi, plastid, unclear	77.83	77.07
AT3G12390.1	Thale cress	cytosol	76.85	76.85
PGSC0003DMT400018552	Potato	nucleus	74.88	76.77
HORVU1Hr1G057970.2	Barley	nucleus	78.82	76.56
Bra038716.1-P	Field mustard	cytosol	49.26	75.19
Os05t0373700-01	Rice	extracellular, golgi, plasma membrane, plastid	75.37	74.63
CDY00769	Canola	cytosol	72.91	73.63
CDX73823	Canola	cytosol	72.91	73.63
Bra034757.1-P	Field mustard	cytosol	73.4	73.04
CDY08433	Canola	plasma membrane	73.4	73.04
Bra001450.1-P	Field mustard	cytosol	67.98	73.02
PGSC0003DMT400072220	Potato	cytosol, endoplasmic reticulum, nucleus	71.92	73.0
CDY42148	Canola	nucleus	72.91	72.91
AT5G13850.1	Thale cress	cytosol	72.91	72.55
CDY50549	Canola	nucleus	71.92	72.28
TraesCS4A01G138000.1	Wheat	plastid, unclear	73.89	72.12
EES15306	Sorghum	nucleus	73.4	71.98
CDY71160	Canola	nucleus	71.43	71.78
Zm00001d029173_P004	Maize	nucleus	72.91	71.5
CDY09831	Canola	nucleus	72.41	71.36
CDX69622	Canola	cytosol	72.41	71.36
TraesCS3A01G474500.1	Wheat	nucleus	66.5	71.05
Bra008797.1-P	Field mustard	cytosol	72.41	70.67
Zm00001d047477_P001	Maize	plastid	70.44	70.44
EER94856	Sorghum	nucleus	71.43	70.05
Zm00001d049830_P002	Maize	extracellular	71.43	69.71
TraesCS4D01G164400.1	Wheat	nucleus	69.95	68.6
TraesCS4B01G154200.1	Wheat	nucleus	69.46	68.45
TraesCS3B01G518000.1	Wheat	cytosol, nucleus, plastid	67.98	67.98
TraesCS3B01G518300.1	Wheat	cytosol, nucleus, plastid	66.5	67.84
TraesCS3D01G470600.2	Wheat	cytosol	64.04	67.71
TraesCS3B01G517400.1	Wheat	cytosol	65.02	66.33
TraesCS3A01G474600.1	Wheat	cytosol	65.02	66.33
TraesCS3B01G518200.1	Wheat	cytosol	42.86	65.91
TraesCSU01G140100.1	Wheat	nucleus	64.04	65.33
HORVU3Hr1G102520.6	Barley	cytosol, nucleus	66.01	64.73
TraesCS3A01G474200.1	Wheat	nucleus	63.05	64.65
TraesCS3D01G470500.1	Wheat	cytosol, nucleus, plastid	59.61	64.36
HORVU2Hr1G015260.1	Barley	cytosol, nucleus, plastid	63.55	63.86
TraesCS3B01G518400.1	Wheat	cytosol	59.61	61.73
TraesCS3A01G474800.1	Wheat	cytosol, nucleus, plastid	58.13	58.42
KRH53644	Soybean	endoplasmic reticulum	63.55	57.85
TraesCSU01G140000.1	Wheat	nucleus	57.64	57.64
KRH64284	Soybean	endoplasmic reticulum	61.08	56.88
KRH64285	Soybean	endoplasmic reticulum	61.58	56.05
KRH53645	Soybean	endoplasmic reticulum	61.08	55.11
TraesCS3B01G517500.1	Wheat	cytosol, golgi, nucleus	54.19	48.89

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.1.2.1.1	Gene3D:2.20.70.30	EMBL:ACUP02002003	InterPro:EGD2/NACA	EnsemblPlantsGene:GLYMA_03G120800
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005854	UniProt:I1JMZ3
InterPro:IPR002715	InterPro:IPR038187	EnsemblPlants:KRH66664	ProteinID:KRH66664	ProteinID:KRH66664.1	InterPro:NAC_A/B_dom_sf
InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849	PIRSF:PIRSF015901	PFscan:PS51151	PANTHER:PTHR21713	PANTHER:PTHR21713:SF16
SMART:SM01407	UniParc:UPI00023C12C2	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:33265163..33267694

Molecular Weight (calculated)

22131.5 Da

IEP (calculated)

4.130

GRAVY (calculated)

-0.783

Length

203 amino acids

Sequence
(BLAST)

001: MTTQTQEELL AQHLEQQKIH DDEPVVEDDN DEEEDDDDDE DDEDDDHADG LEGDASGRSK QTRSEKKSRK AMLKLGMKPV TGVSRVTVKK SKNILFVISK
101: PDVFKSPTSD TYIIFGEAKI EDLSSQLQTQ AAEQFKAPNL SNVGSKPESS AVAQDDEEVD EAGVDPKDIE LVMTQAGVSR PKAVKALKAA GGDIVAAIME
201: LTN

Best Arabidopsis Sequence Match ( AT3G12390.1 )
(BLAST)

001: MTTEEKEILA AKLEEQKIDL DKPEVEDDDD NEDDDSDDDD KDDDEADGLD GEAGGKSKQS RSEKKSRKAM LKLGMKPITG VSRVTVKKSK NILFVISKPD
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT

Arabidopsis Description

Nascent polypeptide-associated complex subunit alpha-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.