Factsheet for Zm00001d047477_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 22065420
plastid: 23198870
plasma membrane: 23353019

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94856	Sorghum	nucleus	93.6	91.79
Zm00001d029173_P004	Maize	nucleus	93.1	91.3
Zm00001d049830_P002	Maize	extracellular	85.22	83.17
TraesCS4B01G154200.1	Wheat	nucleus	81.28	80.1
TraesCS4D01G164400.1	Wheat	nucleus	80.3	78.74
GSMUA_Achr10P...	Banana	nucleus	77.34	78.5
TraesCS4A01G138000.1	Wheat	plastid, unclear	79.8	77.88
VIT_13s0067g00710.t01	Wine grape	nucleus	75.86	76.24
Solyc10g081030.1.1	Tomato	nucleus	74.38	75.88
GSMUA_Achr1P11330_001	Banana	plasma membrane	74.38	75.5
VIT_08s0040g00600.t01	Wine grape	cytosol	72.91	73.27
KRH66666	Soybean	endoplasmic reticulum	71.43	73.23
KRG95031	Soybean	endoplasmic reticulum	72.41	72.77
AT5G13850.1	Thale cress	cytosol	72.91	72.55
PGSC0003DMT400018552	Potato	nucleus	70.44	72.22
KRG95032	Soybean	nucleus	72.41	71.71
Solyc10g078150.1.1	Tomato	nucleus	69.46	71.21
AT3G12390.1	Thale cress	cytosol	70.94	70.94
KRH66664	Soybean	endoplasmic reticulum	70.44	70.44
CDY00769	Canola	cytosol	69.46	70.15
CDX73823	Canola	cytosol	69.46	70.15
CDY50549	Canola	nucleus	69.46	69.8
CDY71160	Canola	nucleus	69.46	69.8
CDY42148	Canola	nucleus	69.46	69.46
CDX69622	Canola	cytosol	69.95	68.93
Bra001450.1-P	Field mustard	cytosol	64.04	68.78
CDY08433	Canola	plasma membrane	68.97	68.63
Bra034757.1-P	Field mustard	cytosol	68.97	68.63
PGSC0003DMT400072220	Potato	cytosol, endoplasmic reticulum, nucleus	67.0	68.0
CDY09831	Canola	nucleus	68.97	67.96
Bra008797.1-P	Field mustard	cytosol	69.46	67.79
Bra038716.1-P	Field mustard	cytosol	44.34	67.67
GSMUA_Achr5P17540_001	Banana	endoplasmic reticulum, extracellular, golgi	69.46	59.0
Zm00001d048479_P002	Maize	plastid	58.62	52.19

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.1.2.1.1	Gene3D:2.20.70.30	ProteinID:AQL06653.1	ncoils:Coil	InterPro:EGD2/NACA
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005854	InterPro:IPR002715
InterPro:IPR038187	UniProt:K7VIA7	InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849	PIRSF:PIRSF015901
PFscan:PS51151	PANTHER:PTHR21713	PANTHER:PTHR21713:SF8	SMART:SM01407	UniParc:UPI000220D603	EnsemblPlantsGene:Zm00001d047477
EnsemblPlants:Zm00001d047477_P001	EnsemblPlants:Zm00001d047477_T001	SEG:seg	:	:	:

Description

Nascent polypeptide-associated complex alpha subunit-like protein

Coordinates

chr9:-:131427574..131429871

Molecular Weight (calculated)

22230.5 Da

IEP (calculated)

4.019

GRAVY (calculated)

-0.817

Length

203 amino acids

Sequence
(BLAST)

001: MTAQTAEELA TQIEQQKLEE QKTEAEEVVV EDEEDDDDED DEDDDELDGQ EGDASGKSKQ SRSEKKSRKA MLKLGMKPIT GVSRVTVKKS KNILFVISKP
101: DVFKSPNSDT YVIFGEAKIE DLSSQLQTQA AEQFKAPDLS QITSPETSGP GQEDNDEEVD ETGVEAKDIE LVMTQASVSR PKAVRALKAS NGDIVTAIMD
201: LTT

Best Arabidopsis Sequence Match ( AT5G13850.1 )
(BLAST)

001: MTAEQKVELA AKLEEQKIDL DKPEVEDDDD NDEDDSEDDD EAEGHDGEAG GRSKQSRSEK KSRKAMLKLG MKPITGVSRV TVKKSKNILF VISKPDVFKS
101: PASDTYVIFG EAKIEDLSSQ LQSQAAEQFK APNLSNVISQ GETSSAATAA AVQDDDDEEV DEEGVEPKDI ELVMTQAGVS KPRAVKALKL ANGDIVSAIM
201: ELTT

Arabidopsis Description

NACA3Nascent polypeptide-associated complex subunit alpha-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6ICZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.