CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95031	Soybean	endoplasmic reticulum	87.37	85.64
KRG95032	Soybean	nucleus	86.87	83.9
GSMUA_Achr10P...	Banana	nucleus	84.34	83.5
KRH66664	Soybean	endoplasmic reticulum	83.84	81.77
GSMUA_Achr1P11330_001	Banana	plasma membrane	82.32	81.5
Solyc10g081030.1.1	Tomato	nucleus	81.31	80.9
Solyc10g078150.1.1	Tomato	nucleus	80.81	80.81
PGSC0003DMT400018552	Potato	nucleus	79.8	79.8
VIT_08s0040g00600.t01	Wine grape	cytosol	80.81	79.21
Os05t0373700-01	Rice	extracellular, golgi, plasma membrane, plastid	80.3	77.56
Os01t0938900-02	Rice	nucleus	78.79	77.23
HORVU1Hr1G057970.2	Barley	nucleus	79.29	75.12
TraesCS1D01G236500.1	Wheat	cytosol	77.27	74.63
AT5G13850.1	Thale cress	cytosol	76.77	74.51
AT3G12390.1	Thale cress	cytosol	75.76	73.89
PGSC0003DMT400072220	Potato	cytosol, endoplasmic reticulum, nucleus	74.24	73.5
TraesCS1B01G248000.1	Wheat	golgi, plastid, unclear	75.76	73.17
EES15306	Sorghum	nucleus	76.26	72.95
CDY09831	Canola	nucleus	74.75	71.84
CDY50549	Canola	nucleus	73.23	71.78
Zm00001d047477_P001	Maize	plastid	73.23	71.43
CDY71160	Canola	nucleus	72.73	71.29
EER94856	Sorghum	nucleus	74.24	71.01
TraesCS3B01G518300.1	Wheat	cytosol, nucleus, plastid	71.21	70.85
Bra038716.1-P	Field mustard	cytosol	47.47	70.68
Zm00001d049830_P002	Maize	extracellular	74.24	70.67
Zm00001d029173_P004	Maize	nucleus	73.74	70.53
TraesCS3A01G474500.1	Wheat	nucleus	67.68	70.53
CDY00769	Canola	cytosol	71.21	70.15
CDX73823	Canola	cytosol	71.21	70.15
CDX69622	Canola	cytosol	72.73	69.9
Bra008797.1-P	Field mustard	cytosol	73.23	69.71
Bra034757.1-P	Field mustard	cytosol	71.72	69.61
CDY08433	Canola	plasma membrane	71.72	69.61
TraesCS4D01G164400.1	Wheat	nucleus	72.22	69.08
TraesCS4B01G154200.1	Wheat	nucleus	71.72	68.93
Bra001450.1-P	Field mustard	cytosol	65.66	68.78
TraesCS3D01G470600.2	Wheat	cytosol	66.67	68.75
TraesCS3A01G474200.1	Wheat	nucleus	68.69	68.69
CDY42148	Canola	nucleus	70.2	68.47
TraesCS3B01G518000.1	Wheat	cytosol, nucleus, plastid	70.2	68.47
TraesCS4A01G138000.1	Wheat	plastid, unclear	71.72	68.27
TraesCS3B01G518200.1	Wheat	cytosol	44.95	67.42
TraesCS3D01G470500.1	Wheat	cytosol, nucleus, plastid	63.64	67.02
TraesCS3A01G474600.1	Wheat	cytosol	67.17	66.83
HORVU3Hr1G102520.6	Barley	cytosol, nucleus	69.19	66.18
TraesCSU01G140100.1	Wheat	nucleus	66.16	65.83
TraesCS3B01G517400.1	Wheat	cytosol	65.15	64.82
TraesCS3B01G518400.1	Wheat	cytosol	62.63	63.27
HORVU2Hr1G015260.1	Barley	cytosol, nucleus, plastid	63.13	61.88
TraesCS3A01G474800.1	Wheat	cytosol, nucleus, plastid	61.11	59.9
KRH53644	Soybean	endoplasmic reticulum	65.66	58.3
TraesCSU01G140000.1	Wheat	nucleus	58.59	57.14
KRH64285	Soybean	endoplasmic reticulum	64.14	56.95
KRH64284	Soybean	endoplasmic reticulum	62.12	56.42
KRH53645	Soybean	endoplasmic reticulum	62.63	55.11
TraesCS3B01G517500.1	Wheat	cytosol, golgi, nucleus	54.04	47.56

Protein Annotations

Gene3D:1.10.8.10	EntrezGene:100527254	MapMan:19.1.2.1.1	Gene3D:2.20.70.30	EMBL:ACUP02002003	InterPro:EGD2/NACA
EnsemblPlantsGene:GLYMA_03G120900	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005854
UniProt:I1JMZ4	InterPro:IPR002715	InterPro:IPR038187	EnsemblPlants:KRH66666	ProteinID:KRH66666	ProteinID:KRH66666.1
InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849	PIRSF:PIRSF015901	PFscan:PS51151	PANTHER:PTHR21713
PANTHER:PTHR21713:SF16	SMART:SM01407	UniParc:UPI00023C12C4	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:33269912..33271772

Molecular Weight (calculated)

21559.8 Da

IEP (calculated)

4.069

GRAVY (calculated)

-0.744

Length

198 amino acids

Sequence
(BLAST)

001: MTAQTQEELL AADLEQQKIH DDEPVVEDDD EDDEDDDDED DDNVEEGDAS GRSKQTRSEK KSRKAMLKLG MKPVTGVSRV TVKKSKNILF VISKPDVFKS
101: PTSDTYIIFG EAKIEDLSSQ LQTQAAEQFK APNVSNDGSK PETSAAAAQD DEDVDETGVD PKDIELVMTQ AGVLRSRAVK ALKAANGDIV AAIMELTN

Best Arabidopsis Sequence Match ( AT3G12390.1 )
(BLAST)

001: MTTEEKEILA AKLEEQKIDL DKPEVEDDDD NEDDDSDDDD KDDDEADGLD GEAGGKSKQS RSEKKSRKAM LKLGMKPITG VSRVTVKKSK NILFVISKPD
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT

Arabidopsis Description

Nascent polypeptide-associated complex subunit alpha-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.