Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G470500.1 | Wheat | cytosol, nucleus, plastid | 89.29 | 93.09 |
| TraesCS3B01G518300.1 | Wheat | cytosol, nucleus, plastid | 78.57 | 77.39 |
| TraesCS3A01G474800.1 | Wheat | cytosol, nucleus, plastid | 76.02 | 73.76 |
| HORVU2Hr1G015260.1 | Barley | cytosol, nucleus, plastid | 71.94 | 69.8 |
| TraesCS3B01G517400.1 | Wheat | cytosol | 70.41 | 69.35 |
| TraesCS3B01G518000.1 | Wheat | cytosol, nucleus, plastid | 70.92 | 68.47 |
| TraesCS3B01G518200.1 | Wheat | cytosol | 45.92 | 68.18 |
| GSMUA_Achr10P... | Banana | nucleus | 65.31 | 64.0 |
| Os01t0938900-02 | Rice | nucleus | 64.8 | 62.87 |
| KRH66666 | Soybean | endoplasmic reticulum | 63.27 | 62.63 |
| Solyc10g081030.1.1 | Tomato | nucleus | 62.76 | 61.81 |
| VIT_13s0067g00710.t01 | Wine grape | nucleus | 63.27 | 61.39 |
| VIT_08s0040g00600.t01 | Wine grape | cytosol | 62.76 | 60.89 |
| KRG95031 | Soybean | endoplasmic reticulum | 62.76 | 60.89 |
| GSMUA_Achr1P11330_001 | Banana | plasma membrane | 61.73 | 60.5 |
| PGSC0003DMT400018552 | Potato | nucleus | 60.71 | 60.1 |
| Solyc10g078150.1.1 | Tomato | nucleus | 60.71 | 60.1 |
| KRH66664 | Soybean | endoplasmic reticulum | 61.73 | 59.61 |
| TraesCS1B01G248000.1 | Wheat | golgi, plastid, unclear | 61.22 | 58.54 |
| KRG95032 | Soybean | nucleus | 60.71 | 58.05 |
| AT3G12390.1 | Thale cress | cytosol | 59.69 | 57.64 |
| CDX69622 | Canola | cytosol | 59.69 | 56.8 |
| CDX73823 | Canola | cytosol | 58.16 | 56.72 |
| CDY00769 | Canola | cytosol | 58.16 | 56.72 |
| AT5G13850.1 | Thale cress | cytosol | 58.67 | 56.37 |
| CDY09831 | Canola | nucleus | 59.18 | 56.31 |
| Bra008797.1-P | Field mustard | cytosol | 59.18 | 55.77 |
| PGSC0003DMT400072220 | Potato | cytosol, endoplasmic reticulum, nucleus | 56.63 | 55.5 |
| Bra001450.1-P | Field mustard | cytosol | 53.06 | 55.03 |
| CDY42148 | Canola | nucleus | 56.63 | 54.68 |
| Bra038716.1-P | Field mustard | cytosol | 36.73 | 54.14 |
| CDY08433 | Canola | plasma membrane | 56.12 | 53.92 |
| Bra034757.1-P | Field mustard | cytosol | 56.12 | 53.92 |
| CDY50549 | Canola | nucleus | 55.1 | 53.47 |
| CDY71160 | Canola | nucleus | 55.1 | 53.47 |
| TraesCS4B01G154200.1 | Wheat | nucleus | 54.59 | 51.94 |
| TraesCS3B01G517500.1 | Wheat | cytosol, golgi, nucleus | 57.65 | 50.22 |
| GSMUA_Achr5P17540_001 | Banana | endoplasmic reticulum, extracellular, golgi | 59.69 | 48.95 |
| TraesCS4B01G347400.1 | Wheat | nucleus | 47.45 | 42.27 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G518400.1 | EnsemblPlantsGene:TraesCS3B01G518400 | Gene3D:1.10.8.10 | Gene3D:2.20.70.30 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005854 | InterPro:EGD2/NACA | InterPro:IPR002715 | InterPro:IPR038187 |
| InterPro:NAC_A/B_dom_sf | InterPro:Nas_poly-pep-assoc_cplx_dom | PANTHER:PTHR21713 | PANTHER:PTHR21713:SF16 | PFAM:PF01849 | PFscan:PS51151 |
| PIRSF:PIRSF015901 | SEG:seg | SMART:SM01407 | MapMan:19.1.2.1.1 | : | : |
Description
No Description!
Coordinates
chr3B:+:761392626..761395164
Molecular Weight (calculated)
21267.5 Da
IEP (calculated)
4.096
GRAVY (calculated)
-0.617
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAAELLRSQ LEEHNIEEDE PILEDDDDDH QDDNEDEDEM DDDDVEGGDA SGRSRSEKKC RKAMERLGMK AITGVSRVTI KQSKTATFVL SKPDVFKSSH
101: SETYVMFGVV KMEDMDAKLL TEAAGQFKAP GPGSVISKGE PSVAAAQDDE EVDETGVDNK DVEVVMVQAS VSRSRAVKAL KAADGDIVSA IVELTN
101: SETYVMFGVV KMEDMDAKLL TEAAGQFKAP GPGSVISKGE PSVAAAQDDE EVDETGVDNK DVEVVMVQAS VSRSRAVKAL KAADGDIVSA IVELTN
001: MTTEEKEILA AKLEEQKIDL DKPEVEDDDD NEDDDSDDDD KDDDEADGLD GEAGGKSKQS RSEKKSRKAM LKLGMKPITG VSRVTVKKSK NILFVISKPD
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT
Arabidopsis Description
Nascent polypeptide-associated complex subunit alpha-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHG9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.