Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038716.1-P | Field mustard | cytosol | 65.91 | 65.41 |
| TraesCS3B01G518000.1 | Wheat | cytosol, nucleus, plastid | 91.67 | 59.61 |
| TraesCS3A01G474500.1 | Wheat | nucleus | 78.79 | 54.74 |
| HORVU3Hr1G102520.6 | Barley | cytosol, nucleus | 76.52 | 48.79 |
| Bra001450.1-P | Field mustard | cytosol | 68.94 | 48.15 |
| TraesCS3B01G517400.1 | Wheat | cytosol | 71.21 | 47.24 |
| TraesCS3B01G518300.1 | Wheat | cytosol, nucleus, plastid | 71.21 | 47.24 |
| Os01t0938900-02 | Rice | nucleus | 70.45 | 46.04 |
| GSMUA_Achr10P... | Banana | nucleus | 69.7 | 46.0 |
| TraesCS3B01G518400.1 | Wheat | cytosol | 68.18 | 45.92 |
| CDY00769 | Canola | cytosol | 68.94 | 45.27 |
| CDX73823 | Canola | cytosol | 68.94 | 45.27 |
| Solyc10g081030.1.1 | Tomato | nucleus | 68.18 | 45.23 |
| KRH66666 | Soybean | endoplasmic reticulum | 67.42 | 44.95 |
| VIT_13s0067g00710.t01 | Wine grape | nucleus | 68.18 | 44.55 |
| Solyc10g078150.1.1 | Tomato | nucleus | 66.67 | 44.44 |
| PGSC0003DMT400018552 | Potato | nucleus | 65.91 | 43.94 |
| TraesCS1B01G248000.1 | Wheat | golgi, plastid, unclear | 68.18 | 43.9 |
| GSMUA_Achr1P11330_001 | Banana | plasma membrane | 65.91 | 43.5 |
| PGSC0003DMT400072220 | Potato | cytosol, endoplasmic reticulum, nucleus | 65.91 | 43.5 |
| CDX69622 | Canola | cytosol | 67.42 | 43.2 |
| KRH66664 | Soybean | endoplasmic reticulum | 65.91 | 42.86 |
| CDY42148 | Canola | nucleus | 65.91 | 42.86 |
| Bra008797.1-P | Field mustard | cytosol | 67.42 | 42.79 |
| AT3G12390.1 | Thale cress | cytosol | 65.15 | 42.36 |
| Bra034757.1-P | Field mustard | cytosol | 65.15 | 42.16 |
| CDY08433 | Canola | plasma membrane | 65.15 | 42.16 |
| KRG95031 | Soybean | endoplasmic reticulum | 64.39 | 42.08 |
| KRG95032 | Soybean | nucleus | 65.15 | 41.95 |
| VIT_08s0040g00600.t01 | Wine grape | cytosol | 63.64 | 41.58 |
| AT5G13850.1 | Thale cress | cytosol | 63.64 | 41.18 |
| CDY09831 | Canola | nucleus | 62.88 | 40.29 |
| CDY71160 | Canola | nucleus | 60.61 | 39.6 |
| CDY50549 | Canola | nucleus | 60.61 | 39.6 |
| TraesCS4B01G154200.1 | Wheat | nucleus | 59.09 | 37.86 |
| GSMUA_Achr5P17540_001 | Banana | endoplasmic reticulum, extracellular, golgi | 62.88 | 34.73 |
| TraesCS3B01G517500.1 | Wheat | cytosol, golgi, nucleus | 55.3 | 32.44 |
| TraesCS4B01G347400.1 | Wheat | nucleus | 53.79 | 32.27 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G518200.1 | EnsemblPlantsGene:TraesCS3B01G518200 | Gene3D:1.10.8.10 | Gene3D:2.20.70.30 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005854 | InterPro:EGD2/NACA | InterPro:IPR002715 | InterPro:IPR038187 |
| InterPro:NAC_A/B_dom_sf | InterPro:Nas_poly-pep-assoc_cplx_dom | PANTHER:PTHR21713 | PANTHER:PTHR21713:SF16 | PFAM:PF01849 | SEG:seg |
| MapMan:19.1.2.1.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:761060038..761062562
Molecular Weight (calculated)
14275.9 Da
IEP (calculated)
4.108
GRAVY (calculated)
-0.195
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVAELQAEL LCAQLEEQSI EVMFVLSKPD VFKSSNSDTY VMFGEPKIED LSTQLRSQAA EQFKAPSPSG IILKGEPSMA AAHDDEEVDE TGVDKKDVEL
101: VMTQASVPRS RAVKALKDAG GDIVSAIMEL TN
101: VMTQASVPRS RAVKALKDAG GDIVSAIMEL TN
001: MTTEEKEILA AKLEEQKIDL DKPEVEDDDD NEDDDSDDDD KDDDEADGLD GEAGGKSKQS RSEKKSRKAM LKLGMKPITG VSRVTVKKSK NILFVISKPD
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT
Arabidopsis Description
Nascent polypeptide-associated complex subunit alpha-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHG9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.