Factsheet for TraesCS1B01G248000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, plastid

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid, unclear
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

plastid: 22160430
golgi: 25769308
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G236500.1	Wheat	cytosol	97.56	97.56
HORVU1Hr1G057970.2	Barley	nucleus	93.66	91.87
Os05t0373700-01	Rice	extracellular, golgi, plasma membrane, plastid	80.49	80.49
VIT_13s0067g00710.t01	Wine grape	nucleus	79.02	80.2
GSMUA_Achr10P...	Banana	nucleus	77.56	79.5
Bra038716.1-P	Field mustard	cytosol	50.73	78.2
KRH66664	Soybean	endoplasmic reticulum	77.07	77.83
Solyc10g078150.1.1	Tomato	nucleus	75.12	77.78
Solyc10g081030.1.1	Tomato	nucleus	75.12	77.39
GSMUA_Achr1P11330_001	Banana	plasma membrane	75.12	77.0
VIT_08s0040g00600.t01	Wine grape	cytosol	75.61	76.73
KRG95031	Soybean	endoplasmic reticulum	75.61	76.73
AT3G12390.1	Thale cress	cytosol	75.61	76.35
PGSC0003DMT400018552	Potato	nucleus	73.17	75.76
KRH66666	Soybean	endoplasmic reticulum	73.17	75.76
CDY71160	Canola	nucleus	74.15	75.25
CDY50549	Canola	nucleus	73.66	74.75
CDX73823	Canola	cytosol	73.17	74.63
CDY00769	Canola	cytosol	73.17	74.63
Bra001450.1-P	Field mustard	cytosol	68.78	74.6
KRG95032	Soybean	nucleus	73.66	73.66
Bra034757.1-P	Field mustard	cytosol	72.68	73.04
CDY08433	Canola	plasma membrane	72.68	73.04
AT5G13850.1	Thale cress	cytosol	71.71	72.06
CDY42148	Canola	nucleus	71.22	71.92
CDX69622	Canola	cytosol	71.71	71.36
TraesCS3B01G518000.1	Wheat	cytosol, nucleus, plastid	70.24	70.94
TraesCS4B01G154200.1	Wheat	nucleus	71.22	70.87
Bra008797.1-P	Field mustard	cytosol	71.71	70.67
PGSC0003DMT400072220	Potato	cytosol, endoplasmic reticulum, nucleus	68.78	70.5
CDY09831	Canola	nucleus	69.76	69.42
TraesCS3B01G518200.1	Wheat	cytosol	43.9	68.18
TraesCS3B01G518300.1	Wheat	cytosol, nucleus, plastid	64.39	66.33
TraesCS3B01G517400.1	Wheat	cytosol	62.93	64.82
GSMUA_Achr5P17540_001	Banana	endoplasmic reticulum, extracellular, golgi	72.68	62.34
TraesCS3B01G518400.1	Wheat	cytosol	58.54	61.22
TraesCS4B01G347400.1	Wheat	nucleus	57.56	53.64
TraesCS3B01G517500.1	Wheat	cytosol, golgi, nucleus	54.15	49.33

Protein Annotations

EnsemblPlants:TraesCS1B01G248000.1	EnsemblPlantsGene:TraesCS1B01G248000	Gene3D:1.10.8.10	Gene3D:2.20.70.30	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005854	InterPro:EGD2/NACA	InterPro:IPR002715	InterPro:IPR038187
InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PANTHER:PTHR21713	PANTHER:PTHR21713:SF16	PFAM:PF01849	PFscan:PS51151
PIRSF:PIRSF015901	SEG:seg	SMART:SM01407	TIGR:cd14358	MapMan:19.1.2.1.1	:

Description

No Description!

Coordinates

chr1B:+:439028034..439030489

Molecular Weight (calculated)

22267.7 Da

IEP (calculated)

4.049

GRAVY (calculated)

-0.666

Length

205 amino acids

Sequence
(BLAST)

001: MTAETAKQAE LLRAVLDEQK LAAQGDEPVV EDDDDEEDED DDDEDDKDDD IEGVDASGRS KQSRSEKKSR KAMLKLGMKT ITGVSRVTVK KSKNILFVIS
101: KPDVFKSPAS DTYVIFGEAK IEDLSSQLQS QAAEQFKAPD LSSVISNPEA STAIQEDDED CDETGVEPKD IELVMTQAGV PRPKAVKALK SADGDIVSAI
201: MELTN

Best Arabidopsis Sequence Match ( AT3G12390.1 )
(BLAST)

001: MTTEEKEILA AKLEEQKIDL DKPEVEDDDD NEDDDSDDDD KDDDEADGLD GEAGGKSKQS RSEKKSRKAM LKLGMKPITG VSRVTVKKSK NILFVISKPD
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT

Arabidopsis Description

Nascent polypeptide-associated complex subunit alpha-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.