CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69622	Canola	cytosol	82.52	82.52
AT5G13850.1	Thale cress	cytosol	80.1	80.88
CDY71160	Canola	nucleus	74.76	76.24
CDY50549	Canola	nucleus	74.76	76.24
CDX73823	Canola	cytosol	74.27	76.12
CDY00769	Canola	cytosol	74.27	76.12
GSMUA_Achr1P11330_001	Banana	plasma membrane	73.79	76.0
GSMUA_Achr10P...	Banana	nucleus	73.3	75.5
VIT_08s0040g00600.t01	Wine grape	cytosol	73.79	75.25
CDY42148	Canola	nucleus	73.79	74.88
KRH66666	Soybean	endoplasmic reticulum	71.84	74.75
CDY08433	Canola	plasma membrane	73.79	74.51
Solyc10g081030.1.1	Tomato	nucleus	71.84	74.37
PGSC0003DMT400018552	Potato	nucleus	70.87	73.74
Solyc10g078150.1.1	Tomato	nucleus	70.39	73.23
KRH66664	Soybean	endoplasmic reticulum	71.36	72.41
VIT_13s0067g00710.t01	Wine grape	nucleus	70.87	72.28
KRG95031	Soybean	endoplasmic reticulum	70.39	71.78
KRG95032	Soybean	nucleus	70.87	71.22
Os01t0938900-02	Rice	nucleus	69.42	70.79
HORVU1Hr1G057970.2	Barley	nucleus	71.36	70.33
TraesCS1D01G236500.1	Wheat	cytosol	69.9	70.24
CDY31855	Canola	cytosol	46.6	70.07
TraesCS1B01G248000.1	Wheat	golgi, plastid, unclear	69.42	69.76
Os05t0373700-01	Rice	extracellular, golgi, plasma membrane, plastid	68.93	69.27
PGSC0003DMT400072220	Potato	cytosol, endoplasmic reticulum, nucleus	66.99	69.0
Zm00001d047477_P001	Maize	plastid	67.96	68.97
EES15306	Sorghum	nucleus	67.96	67.63
Zm00001d049830_P002	Maize	extracellular	67.48	66.83
TraesCS4A01G138000.1	Wheat	plastid, unclear	67.48	66.83
Zm00001d029173_P004	Maize	nucleus	66.99	66.67
TraesCS4D01G164400.1	Wheat	nucleus	66.5	66.18
EER94856	Sorghum	nucleus	66.02	65.7
TraesCS3A01G474200.1	Wheat	nucleus	62.62	65.15
TraesCS4B01G154200.1	Wheat	nucleus	65.05	65.05
TraesCS3A01G474500.1	Wheat	nucleus	59.22	64.21
TraesCS3B01G518300.1	Wheat	cytosol, nucleus, plastid	61.65	63.82
TraesCS3D01G470500.1	Wheat	cytosol, nucleus, plastid	57.77	63.3
TraesCS3D01G470600.2	Wheat	cytosol	58.74	63.02
TraesCS3B01G518200.1	Wheat	cytosol	40.29	62.88
TraesCS3B01G518000.1	Wheat	cytosol, nucleus, plastid	61.65	62.56
TraesCS3B01G517400.1	Wheat	cytosol	58.74	60.8
CDY01344	Canola	cytosol, nucleus, plastid	60.68	60.68
HORVU3Hr1G102520.6	Barley	cytosol, nucleus	60.68	60.39
TraesCS3A01G474600.1	Wheat	cytosol	58.25	60.3
CDY05102	Canola	cytosol, nucleus, plastid	59.71	60.29
TraesCSU01G140100.1	Wheat	nucleus	57.77	59.8
CDX90758	Canola	cytosol, nucleus, plastid	60.19	59.62
TraesCS3B01G518400.1	Wheat	cytosol	56.31	59.18
GSMUA_Achr5P17540_001	Banana	endoplasmic reticulum, extracellular, golgi	68.45	59.0
HORVU2Hr1G015260.1	Barley	cytosol, nucleus, plastid	57.77	58.91
CDY31852	Canola	cytosol, nucleus, plastid	59.71	58.85
CDX86860	Canola	cytosol	59.22	57.55
TraesCSU01G140000.1	Wheat	nucleus	55.83	56.65
TraesCS3A01G474800.1	Wheat	cytosol, nucleus, plastid	54.85	55.94
CDX99543	Canola	nucleus	40.29	46.11
CDY54248	Canola	cytosol	49.51	45.95
TraesCS3B01G517500.1	Wheat	cytosol, golgi, nucleus	48.06	44.0

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.1.2.1.1	Gene3D:2.20.70.30	UniProt:A0A078F8Y0	EnsemblPlants:CDY09831	ProteinID:CDY09831
ProteinID:CDY09831.1	InterPro:EGD2/NACA	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005854	EnsemblPlantsGene:GSBRNA2T00031563001	InterPro:IPR002715	InterPro:IPR038187	InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom
PFAM:PF01849	PIRSF:PIRSF015901	PFscan:PS51151	PANTHER:PTHR21713	PANTHER:PTHR21713:SF16	SMART:SM01407
UniParc:UPI0004EF423E	SEG:seg	:	:	:	:

Description

BnaC09g43300DBnaC09g43300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8Y0]

Coordinates

chrLK031999:+:404052..405303

Molecular Weight (calculated)

21976.3 Da

IEP (calculated)

4.111

GRAVY (calculated)

-0.700

Length

206 amino acids

Sequence
(BLAST)

001: MTAELKEEIL AAKLEEQKID LDTPEVEDDN DEDDDSEDGD EGDGHDDDGE SGGGRSKQSR SEKKSRKAML KLGMKPITGV SRVTIKKSKN ILFVISKPDV
101: FKSPASDTFV IFGEAKIDDL SSQLQTQAAE QFKAPDRSNL VSGGETSSGA GAAAGDQDDE EVDEEGVEPK DIELVMTQAG VSKPRAVKAL KAADGDIVSA
201: IMELTT

Best Arabidopsis Sequence Match ( AT3G12390.1 )
(BLAST)

001: MTTEEKEILA AKLEEQKIDL DKPEVEDDDD NEDDDSDDDD KDDDEADGLD GEAGGKSKQS RSEKKSRKAM LKLGMKPITG VSRVTVKKSK NILFVISKPD
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT

Arabidopsis Description

Nascent polypeptide-associated complex subunit alpha-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.