Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G518400.1 | Wheat | cytosol | 93.09 | 89.29 |
| TraesCS3D01G470600.2 | Wheat | cytosol | 76.06 | 74.48 |
| TraesCS3A01G474800.1 | Wheat | cytosol, nucleus, plastid | 78.72 | 73.27 |
| HORVU2Hr1G015260.1 | Barley | cytosol, nucleus, plastid | 76.6 | 71.29 |
| GSMUA_Achr10P... | Banana | nucleus | 68.62 | 64.5 |
| KRH66666 | Soybean | endoplasmic reticulum | 67.02 | 63.64 |
| Os01t0938900-02 | Rice | nucleus | 68.09 | 63.37 |
| Solyc10g081030.1.1 | Tomato | nucleus | 66.49 | 62.81 |
| VIT_13s0067g00710.t01 | Wine grape | nucleus | 66.49 | 61.88 |
| GSMUA_Achr1P11330_001 | Banana | plasma membrane | 65.43 | 61.5 |
| KRG95031 | Soybean | endoplasmic reticulum | 65.43 | 60.89 |
| Solyc10g078150.1.1 | Tomato | nucleus | 63.83 | 60.61 |
| PGSC0003DMT400018552 | Potato | nucleus | 63.83 | 60.61 |
| VIT_08s0040g00600.t01 | Wine grape | cytosol | 64.89 | 60.4 |
| AT3G12390.1 | Thale cress | cytosol | 64.36 | 59.61 |
| KRH66664 | Soybean | endoplasmic reticulum | 64.36 | 59.61 |
| TraesCS1D01G236500.1 | Wheat | cytosol | 64.89 | 59.51 |
| CDY00769 | Canola | cytosol | 62.77 | 58.71 |
| CDX73823 | Canola | cytosol | 62.77 | 58.71 |
| AT5G13850.1 | Thale cress | cytosol | 63.3 | 58.33 |
| CDX69622 | Canola | cytosol | 63.83 | 58.25 |
| KRG95032 | Soybean | nucleus | 63.3 | 58.05 |
| CDY09831 | Canola | nucleus | 63.3 | 57.77 |
| Bra008797.1-P | Field mustard | cytosol | 63.3 | 57.21 |
| Bra001450.1-P | Field mustard | cytosol | 57.45 | 57.14 |
| PGSC0003DMT400072220 | Potato | cytosol, endoplasmic reticulum, nucleus | 60.11 | 56.5 |
| CDY42148 | Canola | nucleus | 60.64 | 56.16 |
| Bra038716.1-P | Field mustard | cytosol | 39.36 | 55.64 |
| Bra034757.1-P | Field mustard | cytosol | 60.11 | 55.39 |
| CDY08433 | Canola | plasma membrane | 60.11 | 55.39 |
| CDY71160 | Canola | nucleus | 59.04 | 54.95 |
| CDY50549 | Canola | nucleus | 59.04 | 54.95 |
| TraesCS4D01G164400.1 | Wheat | nucleus | 58.51 | 53.14 |
| GSMUA_Achr5P17540_001 | Banana | endoplasmic reticulum, extracellular, golgi | 63.3 | 49.79 |
| TraesCS4D01G342400.1 | Wheat | nucleus | 50.53 | 42.79 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G470500.1 | EnsemblPlantsGene:TraesCS3D01G470500 | Gene3D:1.10.8.10 | Gene3D:2.20.70.30 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005854 | InterPro:EGD2/NACA | InterPro:IPR002715 | InterPro:IPR038187 |
| InterPro:NAC_A/B_dom_sf | InterPro:Nas_poly-pep-assoc_cplx_dom | PANTHER:PTHR21713 | PANTHER:PTHR21713:SF16 | PFAM:PF01849 | PFscan:PS51151 |
| PIRSF:PIRSF015901 | SEG:seg | SMART:SM01407 | MapMan:19.1.2.1.1 | : | : |
Description
No Description!
Coordinates
chr3D:-:572487176..572490114
Molecular Weight (calculated)
20294.8 Da
IEP (calculated)
4.256
GRAVY (calculated)
-0.437
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAAELLRAQ LGEHNIEEDD PILEDDEDAD EMDDDDVEGG DASGRSRSEK KCRKAMEKLG MKAITGVSRV TIKQSKTVTF VLSKPDVFKS SHSETYVMFG
101: VVKMEDMDAQ LLTEAAGQFK APGPSSVISK GEPSVAAAQD DKEVDETGVD NKDVEVVMMQ ASVSRSRAVK ALKAADGDIV SAIMELTY
101: VVKMEDMDAQ LLTEAAGQFK APGPSSVISK GEPSVAAAQD DKEVDETGVD NKDVEVVMMQ ASVSRSRAVK ALKAADGDIV SAIMELTY
001: MTTEEKEILA AKLEEQKIDL DKPEVEDDDD NEDDDSDDDD KDDDEADGLD GEAGGKSKQS RSEKKSRKAM LKLGMKPITG VSRVTVKKSK NILFVISKPD
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT
Arabidopsis Description
Nascent polypeptide-associated complex subunit alpha-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHG9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.