Factsheet for TraesCS4D01G342400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G084900.2	Barley	mitochondrion	61.26	99.27
TraesCS5A01G516100.1	Wheat	nucleus	94.59	94.59
TraesCS4B01G347400.1	Wheat	nucleus	93.69	94.55
Os03t0121700-01	Rice	plasma membrane	74.32	74.66
EER95617	Sorghum	cytosol	74.77	73.45
Zm00001d048479_P002	Maize	plastid	73.42	71.49
CDY31855	Canola	cytosol	43.69	70.8
Solyc03g080160.2.1	Tomato	nucleus	62.16	67.65
VIT_16s0098g00830.t01	Wine grape	cytosol, nucleus, plastid	62.16	65.71
KRH53644	Soybean	endoplasmic reticulum	65.32	65.02
KRH64285	Soybean	endoplasmic reticulum	65.32	65.02
GSMUA_Achr1P06350_001	Banana	cytosol	62.61	64.95
PGSC0003DMT400001566	Potato	cytosol	59.01	64.22
KRH64284	Soybean	endoplasmic reticulum	62.16	63.3
KRH53645	Soybean	endoplasmic reticulum	63.51	62.67
Bra000711.1-P	Field mustard	cytosol, nucleus, plastid	58.56	62.5
CDX90758	Canola	cytosol, nucleus, plastid	58.56	62.5
CDY05102	Canola	cytosol, nucleus, plastid	57.21	62.25
CDY31852	Canola	cytosol, nucleus, plastid	58.11	61.72
Bra012259.1-P	Field mustard	cytosol	52.7	60.94
CDY01344	Canola	cytosol, nucleus, plastid	55.86	60.19
CDX86860	Canola	cytosol	57.21	59.91
Bra037920.1-P	Field mustard	cytosol	57.21	59.91
TraesCS1D01G236500.1	Wheat	cytosol	54.05	58.54
TraesCS4D01G164400.1	Wheat	nucleus	54.5	58.45
TraesCS3D01G470600.2	Wheat	cytosol	47.3	54.69
Os07t0407300-00	Rice	cytosol, nucleus, plastid	29.73	54.1
AT3G49470.2	Thale cress	cytosol	55.41	53.02
TraesCS3D01G470500.1	Wheat	cytosol, nucleus, plastid	42.79	50.53
GSMUA_Achr5P20310_001	Banana	mitochondrion	45.05	50.51
CDX99543	Canola	nucleus	39.64	48.89
CDY54248	Canola	cytosol	41.89	41.89
Os01t0698900-00	Rice	plasma membrane	62.61	36.39

Protein Annotations

EnsemblPlants:TraesCS4D01G342400.1	EnsemblPlantsGene:TraesCS4D01G342400	Gene3D:1.10.8.10	Gene3D:2.20.70.30	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005854	InterPro:EGD2/NACA	InterPro:IPR002715	InterPro:IPR038187
InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PANTHER:PTHR21713	PANTHER:PTHR21713:SF7	PFAM:PF01849	PFscan:PS51151
PIRSF:PIRSF015901	SEG:seg	SMART:SM01407	TIGR:cd14358	MapMan:19.1.2.1.1	:

Description

No Description!

Coordinates

chr4D:-:498899729..498900729

Molecular Weight (calculated)

23700.4 Da

IEP (calculated)

4.002

GRAVY (calculated)

-0.578

Length

222 amino acids

Sequence
(BLAST)

001: MVSEQTPVTT EPELESGDAA PVIKAEEPAE DGAPVVEDVK EGDGDEDEEE DEDDDEDDED EDGELGVAGT EGSKQSRSEK KSRKAMMKLG MKPVTGVSRI
101: TIKRAKNILF VVSKPDVFKS PTSETYVIFG EAKIEDLSSQ LQAQAAQQFR MQDLSKAMRP DAAAAAGAGA PADEEEVVDE TGIEARDIDL VMTQASVSRA
201: KAVKALKAHD GDIVSAIMEL TA

Best Arabidopsis Sequence Match ( AT1G33040.1 )
(BLAST)

001: MPGAIVEEEK SQIESIKEQL KLEKEDDVVV EDVKDGEEED DDEDDEDVEV EGEGGNENAK QSRSEKKSRK AVLKLGMKPV SDVSRVTIKR AKNVLFVISK
101: PDVYKSPNAE TYVIFGEAKV DDLSSQLQTQ AAQRFKMPDV TSMLPNAGSE ATMAPLAEEE DEDDVDDTGV EARDIDLVMT QAGVSKAKAV SALKANDGDI
201: VSAIMELTT

Arabidopsis Description

NACA5Nascent polypeptide-associated complex subunit alpha-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGC6]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.