Factsheet for PGSC0003DMT400001566

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g080160.2.1	Tomato	nucleus	87.75	87.75
CDY31855	Canola	cytosol	49.02	72.99
VIT_16s0098g00830.t01	Wine grape	cytosol, nucleus, plastid	75.0	72.86
KRH53644	Soybean	endoplasmic reticulum	72.55	66.37
KRH64285	Soybean	endoplasmic reticulum	72.06	65.92
KRH64284	Soybean	endoplasmic reticulum	69.12	64.68
KRH53645	Soybean	endoplasmic reticulum	70.59	64.0
PGSC0003DMT400018552	Potato	nucleus	61.76	63.64
CDY01344	Canola	cytosol, nucleus, plastid	64.22	63.59
CDY31852	Canola	cytosol, nucleus, plastid	64.71	63.16
CDY05102	Canola	cytosol, nucleus, plastid	62.25	62.25
Bra000711.1-P	Field mustard	cytosol, nucleus, plastid	63.24	62.02
CDX90758	Canola	cytosol, nucleus, plastid	63.24	62.02
Bra012259.1-P	Field mustard	cytosol	56.86	60.42
Bra037920.1-P	Field mustard	cytosol	62.75	60.38
CDX86860	Canola	cytosol	62.25	59.91
Os03t0121700-01	Rice	plasma membrane	64.22	59.28
TraesCS4D01G342400.1	Wheat	nucleus	64.22	59.01
TraesCS4B01G347400.1	Wheat	nucleus	63.24	58.64
TraesCS5A01G516100.1	Wheat	nucleus	63.73	58.56
PGSC0003DMT400072220	Potato	cytosol, endoplasmic reticulum, nucleus	57.35	58.5
AT3G49470.2	Thale cress	cytosol	66.18	58.19
EER95617	Sorghum	cytosol	64.22	57.96
Zm00001d048479_P002	Maize	plastid	64.71	57.89
CDX99543	Canola	nucleus	42.16	47.78
GSMUA_Achr11P...	Banana	cytosol	37.75	46.67
CDY54248	Canola	cytosol	44.61	40.99
Os07t0407300-00	Rice	cytosol, nucleus, plastid	24.51	40.98
HORVU3Hr1G102230.1	Barley	nucleus	18.63	38.38
Os01t0698900-00	Rice	plasma membrane	53.92	28.8

Protein Annotations

Gene3D:1.10.8.10	EntrezGene:102591892	MapMan:19.1.2.1.1	Gene3D:2.20.70.30	InterPro:EGD2/NACA	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005854	InterPro:IPR002715	InterPro:IPR038187
UniProt:M0ZIP7	InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849	EnsemblPlantsGene:PGSC0003DMG400000579	PGSC:PGSC0003DMG400000579
EnsemblPlants:PGSC0003DMT400001566	PIRSF:PIRSF015901	PFscan:PS51151	PANTHER:PTHR21713	PANTHER:PTHR21713:SF7	SMART:SM01407
UniParc:UPI000295EA86	RefSeq:XP_006347524.1	SEG:seg	:	:	:

Description

Nascent polypeptide associated complex alpha subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400000579]

Coordinates

chr3:-:47358462..47361356

Molecular Weight (calculated)

22316.8 Da

IEP (calculated)

4.180

GRAVY (calculated)

-0.803

Length

204 amino acids

Sequence
(BLAST)

001: MPGPVIEELE AEKKIQEDEP IVEDVKEEDD HDDDADDSED DEDDDKEDGA QGGNSKQSRS EKKSRKAMLK LGMKPVTGVS RVTIKRTKNV LFFISKPDVF
101: KSPNSETYVI FGEAKIEDLS SQLQTQAAQQ FRMPDMGSVM AKPDVSGSNA AAEADQEEEV DETGVEPRDI ELVSTQAGVS RGKAVKALKT HNGDIVSAIM
201: ELTT

Best Arabidopsis Sequence Match ( AT3G49470.1 )
(BLAST)

001: MSPPPAVVTE SADGQPEQPP VTAIAEELEK KLQTDEPIVE DVKDDEDDDD DDEEEEDDDA QGVSGSSKQS RSEKKSRKAM LKLGMKPVTG VSRVTIKRTK
101: NVLFFISKPD VFKSPHSETY VIFGEAKIED LSSQLQTQAA QQFRMPEIGA TSQRAEASTA TVEAQVEEDE EEIDETGVEA RDIDLVMTQA GVSRSKAVKA
201: LKSHDGDIVS AIMELTT

Arabidopsis Description

NACA2Nascent polypeptide-associated complex subunit alpha-like protein 2 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LR04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.