CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53644	Soybean	endoplasmic reticulum	93.27	93.27
KRH53645	Soybean	endoplasmic reticulum	83.41	82.67
KRH64284	Soybean	endoplasmic reticulum	78.48	80.28
Solyc03g080160.2.1	Tomato	nucleus	67.71	74.02
VIT_16s0098g00830.t01	Wine grape	cytosol, nucleus, plastid	69.06	73.33
PGSC0003DMT400001566	Potato	cytosol	65.92	72.06
CDY31855	Canola	cytosol	43.95	71.53
TraesCS4D01G342400.1	Wheat	nucleus	65.02	65.32
Os03t0121700-01	Rice	plasma membrane	64.57	65.16
TraesCS4B01G347400.1	Wheat	nucleus	64.13	65.0
TraesCS5A01G516100.1	Wheat	nucleus	64.13	64.41
KRH66666	Soybean	endoplasmic reticulum	56.95	64.14
KRG95031	Soybean	endoplasmic reticulum	57.4	63.37
CDY31852	Canola	cytosol, nucleus, plastid	59.19	63.16
Zm00001d048479_P002	Maize	plastid	64.13	62.72
Bra037920.1-P	Field mustard	cytosol	59.19	62.26
Bra000711.1-P	Field mustard	cytosol, nucleus, plastid	57.85	62.02
CDX90758	Canola	cytosol, nucleus, plastid	57.85	62.02
CDX86860	Canola	cytosol	58.74	61.79
CDY05102	Canola	cytosol, nucleus, plastid	56.5	61.76
CDY01344	Canola	cytosol, nucleus, plastid	56.95	61.65
KRH66664	Soybean	endoplasmic reticulum	56.05	61.58
EER95617	Sorghum	cytosol	62.33	61.5
KRG95032	Soybean	nucleus	56.05	60.98
Bra012259.1-P	Field mustard	cytosol	52.47	60.94
AT3G49470.2	Thale cress	cytosol	62.33	59.91
CDX99543	Canola	nucleus	39.46	48.89
GSMUA_Achr11P...	Banana	cytosol	34.08	46.06
Os07t0407300-00	Rice	cytosol, nucleus, plastid	25.11	45.9
CDY54248	Canola	cytosol	41.26	41.44
HORVU3Hr1G102230.1	Barley	nucleus	17.49	39.39
Os01t0698900-00	Rice	plasma membrane	53.36	31.15

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.1.2.1.1	Gene3D:2.20.70.30	EMBL:ACUP02002752	InterPro:EGD2/NACA	EnsemblPlantsGene:GLYMA_04G227400
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005854	UniProt:I1JYG7
InterPro:IPR002715	InterPro:IPR038187	EnsemblPlants:KRH64285	ProteinID:KRH64285	ProteinID:KRH64285.1	InterPro:NAC_A/B_dom_sf
InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849	PIRSF:PIRSF015901	PFscan:PS51151	PANTHER:PTHR21713	PANTHER:PTHR21713:SF7
SMART:SM01407	UniParc:UPI0002339C51	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:49691703..49694295

Molecular Weight (calculated)

24246.8 Da

IEP (calculated)

4.038

GRAVY (calculated)

-0.840

Length

223 amino acids

Sequence
(BLAST)

001: MSPGPVVDAS PEVDAEQQLP SVDDATQKKI PQPQEDDAPL VEDLKDDDKD DDDEDDDDDD EDDKEDDAQG GAEGSKQSRS EKKSRKAMLK LGLKPVTGVS
101: RVTIKRTKNI LFFISKPDVF KSPNSETYVI FGEAKIEDLS SQLQTQAAQQ FRMPDMGSVT AKQEDAAAAA AQPEEEEEVD ETGVEPHDID LVMTQAGVSR
201: SKAVKALKTH NGDIVGAIME LTT

Best Arabidopsis Sequence Match ( AT3G49470.1 )
(BLAST)

001: MSPPPAVVTE SADGQPEQPP VTAIAEELEK KLQTDEPIVE DVKDDEDDDD DDEEEEDDDA QGVSGSSKQS RSEKKSRKAM LKLGMKPVTG VSRVTIKRTK
101: NVLFFISKPD VFKSPHSETY VIFGEAKIED LSSQLQTQAA QQFRMPEIGA TSQRAEASTA TVEAQVEEDE EEIDETGVEA RDIDLVMTQA GVSRSKAVKA
201: LKSHDGDIVS AIMELTT

Arabidopsis Description

NACA2Nascent polypeptide-associated complex subunit alpha-like protein 2 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LR04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.