Factsheet for Zm00001d048479_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G084900.2	Barley	mitochondrion	53.51	89.05
EER95617	Sorghum	cytosol	78.95	79.65
Os03t0121700-01	Rice	plasma membrane	73.25	75.57
TraesCS4D01G342400.1	Wheat	nucleus	71.49	73.42
TraesCS4B01G347400.1	Wheat	nucleus	69.74	72.27
TraesCS5A01G516100.1	Wheat	nucleus	70.18	72.07
VIT_16s0098g00830.t01	Wine grape	cytosol, nucleus, plastid	63.6	69.05
Solyc03g080160.2.1	Tomato	nucleus	61.4	68.63
CDY31855	Canola	cytosol	41.23	68.61
KRH64284	Soybean	endoplasmic reticulum	63.6	66.51
GSMUA_Achr1P06350_001	Banana	cytosol	60.96	64.95
PGSC0003DMT400001566	Potato	cytosol	57.89	64.71
KRH53644	Soybean	endoplasmic reticulum	63.16	64.57
KRH64285	Soybean	endoplasmic reticulum	62.72	64.13
KRH53645	Soybean	endoplasmic reticulum	62.28	63.11
CDY31852	Canola	cytosol, nucleus, plastid	55.7	60.77
CDX86860	Canola	cytosol	56.14	60.38
Bra037920.1-P	Field mustard	cytosol	56.14	60.38
Bra000711.1-P	Field mustard	cytosol, nucleus, plastid	54.39	59.62
CDX90758	Canola	cytosol, nucleus, plastid	54.39	59.62
CDY01344	Canola	cytosol, nucleus, plastid	53.51	59.22
Zm00001d049830_P002	Maize	extracellular	53.95	59.13
Zm00001d029173_P004	Maize	nucleus	53.51	58.94
Bra012259.1-P	Field mustard	cytosol	49.56	58.85
CDY05102	Canola	cytosol, nucleus, plastid	52.63	58.82
Zm00001d047477_P001	Maize	plastid	52.19	58.62
AT3G49470.2	Thale cress	cytosol	55.7	54.74
Os07t0407300-00	Rice	cytosol, nucleus, plastid	27.63	51.64
GSMUA_Achr5P20310_001	Banana	mitochondrion	44.74	51.52
CDX99543	Canola	nucleus	39.91	50.56
CDY54248	Canola	cytosol	41.67	42.79
Os01t0698900-00	Rice	plasma membrane	61.4	36.65

Protein Annotations

Gene3D:1.10.8.10	EntrezGene:100281315	MapMan:19.1.2.1.1	Gene3D:2.20.70.30	ProteinID:AQL09892.1	UniProt:B6SU89
InterPro:EGD2/NACA	EMBL:EU956304	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005854	InterPro:IPR002715	InterPro:IPR038187	InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849
PIRSF:PIRSF015901	PFscan:PS51151	PANTHER:PTHR21713	PANTHER:PTHR21713:SF7	SMART:SM01407	UniParc:UPI000182ADE5
EnsemblPlantsGene:Zm00001d048479	EnsemblPlants:Zm00001d048479_P002	EnsemblPlants:Zm00001d048479_T002	SEG:seg	:	:

Description

Nascent polypeptide-associated complex alpha subunit-like protein

Coordinates

chr9:-:156995451..156996912

Molecular Weight (calculated)

24357.0 Da

IEP (calculated)

3.947

GRAVY (calculated)

-0.587

Length

228 amino acids

Sequence
(BLAST)

001: MVSEQQAPAA EVVVEGSEAA AEVPVESEEA AAPKAEEQQD DEAPVVEDVK EDEDEDDDDE DDDDADDDDA DGGAGATEGT KQSRSEKKSR KAMMKLGMKP
101: VTGVTRITIK RAKNILFVVS KPDVFKSPTS ETYVIFGEAK IEDLSSQLQA QAAQQFRMQD LSKVMAKQDA AAAAAAPADE EEEVDEAGIE PRDIDLVMTQ
201: ASVTRAKAVK ALKAHDGDIV SAIMELTA

Best Arabidopsis Sequence Match ( AT3G12390.1 )
(BLAST)

001: MTTEEKEILA AKLEEQKIDL DKPEVEDDDD NEDDDSDDDD KDDDEADGLD GEAGGKSKQS RSEKKSRKAM LKLGMKPITG VSRVTVKKSK NILFVISKPD
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT

Arabidopsis Description

Nascent polypeptide-associated complex subunit alpha-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.