Factsheet for Zm00001d049830_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029173_P004	Maize	nucleus	89.9	90.34
EES15306	Sorghum	nucleus	88.46	88.89
Zm00001d047477_P001	Maize	plastid	83.17	85.22
TraesCS4A01G138000.1	Wheat	plastid, unclear	78.85	78.85
TraesCS4B01G154200.1	Wheat	nucleus	76.44	77.18
GSMUA_Achr10P...	Banana	nucleus	73.56	76.5
TraesCS4D01G164400.1	Wheat	nucleus	75.48	75.85
VIT_13s0067g00710.t01	Wine grape	nucleus	73.56	75.74
KRH66666	Soybean	endoplasmic reticulum	70.67	74.24
CDX73823	Canola	cytosol	71.63	74.13
CDY00769	Canola	cytosol	71.63	74.13
Solyc10g081030.1.1	Tomato	nucleus	70.19	73.37
KRG95031	Soybean	endoplasmic reticulum	71.15	73.27
GSMUA_Achr1P11330_001	Banana	plasma membrane	70.19	73.0
Bra001450.1-P	Field mustard	cytosol	65.87	72.49
Solyc10g078150.1.1	Tomato	nucleus	68.75	72.22
KRG95032	Soybean	nucleus	70.67	71.71
KRH66664	Soybean	endoplasmic reticulum	69.71	71.43
VIT_08s0040g00600.t01	Wine grape	cytosol	69.23	71.29
AT5G13850.1	Thale cress	cytosol	69.71	71.08
CDY08433	Canola	plasma membrane	69.71	71.08
Bra034757.1-P	Field mustard	cytosol	69.71	71.08
CDY42148	Canola	nucleus	69.23	70.94
PGSC0003DMT400018552	Potato	nucleus	67.31	70.71
AT3G12390.1	Thale cress	cytosol	68.75	70.44
CDX69622	Canola	cytosol	69.23	69.9
Bra038716.1-P	Field mustard	cytosol	44.23	69.17
Bra008797.1-P	Field mustard	cytosol	68.75	68.75
CDY50549	Canola	nucleus	66.35	68.32
CDY09831	Canola	nucleus	66.83	67.48
CDY71160	Canola	nucleus	65.38	67.33
PGSC0003DMT400072220	Potato	cytosol, endoplasmic reticulum, nucleus	64.42	67.0
GSMUA_Achr5P17540_001	Banana	endoplasmic reticulum, extracellular, golgi	68.27	59.41
Zm00001d048479_P002	Maize	plastid	59.13	53.95

Protein Annotations

Gene3D:1.10.8.10	EntrezGene:100217069	MapMan:19.1.2.1.1	Gene3D:2.20.70.30	ProteinID:AQK51452.1	UniProt:B4FL79
EMBL:BT037867	ncoils:Coil	InterPro:EGD2/NACA	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005854	InterPro:IPR002715	InterPro:IPR038187	InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom
PFAM:PF01849	PIRSF:PIRSF015901	PFscan:PS51151	PANTHER:PTHR21713	PANTHER:PTHR21713:SF8	SMART:SM01407
UniParc:UPI00017B6A9A	EnsemblPlantsGene:Zm00001d049830	EnsemblPlants:Zm00001d049830_P002	EnsemblPlants:Zm00001d049830_T002	SEG:seg	:

Description

Nascent polypeptide-associated complex subunit alpha-like protein 3

Coordinates

chr4:+:46813744..46816659

Molecular Weight (calculated)

22831.4 Da

IEP (calculated)

4.036

GRAVY (calculated)

-0.816

Length

208 amino acids

Sequence
(BLAST)

001: MTAQAAEELA AQIEQQKLEE QKTEAEEVVV EEDDEDDEDD DDDDKDDDEL DGQEGDGSGK SKQSRSEKKS RKAMLKLGMK PITGVSRVTV KKSKNMLFVI
101: SKPDVFKSPN SDTYVIFGEA KIEDLSSQLQ TQAAEQFKAP DLSQMIPKPE TSGLGLEDNE EEEVDETGVE AKDVELVMTQ ASVSRPRAVK ALKASNGDIV
201: TAIMELTT

Best Arabidopsis Sequence Match ( AT3G12390.1 )
(BLAST)

001: MTTEEKEILA AKLEEQKIDL DKPEVEDDDD NEDDDSDDDD KDDDEADGLD GEAGGKSKQS RSEKKSRKAM LKLGMKPITG VSRVTVKKSK NILFVISKPD
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT

Arabidopsis Description

Nascent polypeptide-associated complex subunit alpha-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.