CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50549	Canola	nucleus	99.01	99.01
Bra038716.1-P	Field mustard	cytosol	58.91	89.47
AT3G12390.1	Thale cress	cytosol	87.13	86.7
CDX73823	Canola	cytosol	85.64	86.07
CDY00769	Canola	cytosol	85.64	86.07
CDY08433	Canola	plasma membrane	86.14	85.29
CDY42148	Canola	nucleus	85.64	85.22
Solyc10g078150.1.1	Tomato	nucleus	74.26	75.76
HORVU1Hr1G057970.2	Barley	nucleus	78.22	75.6
TraesCS1D01G236500.1	Wheat	cytosol	76.24	75.12
CDY09831	Canola	nucleus	76.24	74.76
VIT_13s0067g00710.t01	Wine grape	nucleus	74.26	74.26
TraesCS1B01G248000.1	Wheat	golgi, plastid, unclear	75.25	74.15
GSMUA_Achr10P...	Banana	nucleus	73.27	74.0
Solyc10g081030.1.1	Tomato	nucleus	72.77	73.87
PGSC0003DMT400018552	Potato	nucleus	72.28	73.74
KRG95031	Soybean	endoplasmic reticulum	73.27	73.27
GSMUA_Achr1P11330_001	Banana	plasma membrane	72.28	73.0
KRH66666	Soybean	endoplasmic reticulum	71.29	72.73
KRH66664	Soybean	endoplasmic reticulum	71.78	71.43
CDX69622	Canola	cytosol	72.77	71.36
VIT_08s0040g00600.t01	Wine grape	cytosol	70.79	70.79
Os05t0373700-01	Rice	extracellular, golgi, plasma membrane, plastid	71.78	70.73
KRG95032	Soybean	nucleus	71.29	70.24
Zm00001d047477_P001	Maize	plastid	69.8	69.46
CDY31855	Canola	cytosol	47.03	69.34
EES15306	Sorghum	nucleus	70.79	69.08
TraesCS4A01G138000.1	Wheat	plastid, unclear	70.79	68.75
Os01t0938900-02	Rice	nucleus	68.32	68.32
TraesCS4D01G164400.1	Wheat	nucleus	69.8	68.12
PGSC0003DMT400072220	Potato	cytosol, endoplasmic reticulum, nucleus	67.33	68.0
Zm00001d029173_P004	Maize	nucleus	69.31	67.63
EER94856	Sorghum	nucleus	69.31	67.63
TraesCS4B01G154200.1	Wheat	nucleus	67.82	66.5
Zm00001d049830_P002	Maize	extracellular	67.33	65.38
TraesCS3A01G474500.1	Wheat	nucleus	58.91	62.63
TraesCS3B01G518000.1	Wheat	cytosol, nucleus, plastid	62.87	62.56
TraesCS3A01G474200.1	Wheat	nucleus	60.89	62.12
TraesCS3B01G518300.1	Wheat	cytosol, nucleus, plastid	60.4	61.31
TraesCS3B01G518200.1	Wheat	cytosol	39.6	60.61
HORVU3Hr1G102520.6	Barley	cytosol, nucleus	61.88	60.39
TraesCS3D01G470600.2	Wheat	cytosol	56.93	59.9
TraesCS3D01G470500.1	Wheat	cytosol, nucleus, plastid	54.95	59.04
TraesCS3B01G517400.1	Wheat	cytosol	57.92	58.79
CDY05102	Canola	cytosol, nucleus, plastid	58.91	58.33
TraesCSU01G140100.1	Wheat	nucleus	57.43	58.29
CDX90758	Canola	cytosol, nucleus, plastid	59.9	58.17
CDY31852	Canola	cytosol, nucleus, plastid	59.9	57.89
CDY01344	Canola	cytosol, nucleus, plastid	58.91	57.77
GSMUA_Achr5P17540_001	Banana	endoplasmic reticulum, extracellular, golgi	68.32	57.74
TraesCS3A01G474600.1	Wheat	cytosol	56.44	57.29
CDX86860	Canola	cytosol	59.9	57.08
TraesCS3B01G518400.1	Wheat	cytosol	53.47	55.1
HORVU2Hr1G015260.1	Barley	cytosol, nucleus, plastid	54.95	54.95
TraesCS3A01G474800.1	Wheat	cytosol, nucleus, plastid	53.47	53.47
TraesCSU01G140000.1	Wheat	nucleus	51.49	51.23
CDX99543	Canola	nucleus	41.09	46.11
TraesCS3B01G517500.1	Wheat	cytosol, golgi, nucleus	48.02	43.11
CDY54248	Canola	cytosol	47.03	42.79

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.1.2.1.1	Gene3D:2.20.70.30	UniProt:A0A078JXJ3	EnsemblPlants:CDY71160	ProteinID:CDY71160
ProteinID:CDY71160.1	InterPro:EGD2/NACA	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005854	EnsemblPlantsGene:GSBRNA2T00011767001	InterPro:IPR002715	InterPro:IPR038187	InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom
PFAM:PF01849	PIRSF:PIRSF015901	PFscan:PS51151	PANTHER:PTHR21713	PANTHER:PTHR21713:SF16	SMART:SM01407
UniParc:UPI0001BA8DA3	SEG:seg	:	:	:	:

Description

BnaCnng71630DBnaCnng71630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JXJ3]

Coordinates

chrLK044716:-:1412..2740

Molecular Weight (calculated)

21862.3 Da

IEP (calculated)

4.107

GRAVY (calculated)

-0.710

Length

202 amino acids

Sequence
(BLAST)

001: MTTEEKEILA AKLEEQKIDL DKPEVEDADD NDEEDSDDDD DDAEGQDGEA GGKSKQSRSE KKSRKAMLKL GMKPITGVSR VTVKKSKNIM FVISKPDVFK
101: SPASDTYVIF GEAKIEDLSS QMQSQAAEQF KAPDLSNVIK GESSSSAAAV VQDDDEDVDE DGVEPKDIEL VMTQAGVTRP KAVKALKSAD GDIVTAIMEL
201: TT

Best Arabidopsis Sequence Match ( AT3G12390.1 )
(BLAST)

001: MTTEEKEILA AKLEEQKIDL DKPEVEDDDD NEDDDSDDDD KDDDEADGLD GEAGGKSKQS RSEKKSRKAM LKLGMKPITG VSRVTVKKSK NILFVISKPD
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT

Arabidopsis Description

Nascent polypeptide-associated complex subunit alpha-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.