CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08433	Canola	plasma membrane	97.04	96.57
CDX73823	Canola	cytosol	92.12	93.03
CDY00769	Canola	cytosol	92.12	93.03
CDY71160	Canola	nucleus	85.22	85.64
CDY50549	Canola	nucleus	85.22	85.64
AT3G12390.1	Thale cress	cytosol	84.73	84.73
CDX69622	Canola	cytosol	76.35	75.24
GSMUA_Achr10P...	Banana	nucleus	73.4	74.5
CDY09831	Canola	nucleus	74.88	73.79
Solyc10g078150.1.1	Tomato	nucleus	71.92	73.74
VIT_13s0067g00710.t01	Wine grape	nucleus	72.91	73.27
KRH66664	Soybean	endoplasmic reticulum	72.91	72.91
Os01t0938900-02	Rice	nucleus	72.41	72.77
TraesCS1D01G236500.1	Wheat	cytosol	72.91	72.2
KRG95031	Soybean	endoplasmic reticulum	70.94	71.29
TraesCS1B01G248000.1	Wheat	golgi, plastid, unclear	71.92	71.22
Solyc10g081030.1.1	Tomato	nucleus	69.46	70.85
Os05t0373700-01	Rice	extracellular, golgi, plasma membrane, plastid	71.43	70.73
PGSC0003DMT400018552	Potato	nucleus	68.97	70.71
KRH66666	Soybean	endoplasmic reticulum	68.47	70.2
Zm00001d029173_P004	Maize	nucleus	71.43	70.05
KRG95032	Soybean	nucleus	70.44	69.76
GSMUA_Achr1P11330_001	Banana	plasma membrane	68.47	69.5
Zm00001d047477_P001	Maize	plastid	69.46	69.46
HORVU1Hr1G057970.2	Barley	nucleus	71.43	69.38
CDY31855	Canola	cytosol	46.8	69.34
Zm00001d049830_P002	Maize	extracellular	70.94	69.23
VIT_08s0040g00600.t01	Wine grape	cytosol	68.47	68.81
EES15306	Sorghum	nucleus	69.95	68.6
EER94856	Sorghum	nucleus	68.97	67.63
TraesCS3A01G474500.1	Wheat	nucleus	62.56	66.84
TraesCS4A01G138000.1	Wheat	plastid, unclear	68.47	66.83
TraesCS4B01G154200.1	Wheat	nucleus	67.49	66.5
TraesCS3B01G518000.1	Wheat	cytosol, nucleus, plastid	66.5	66.5
PGSC0003DMT400072220	Potato	cytosol, endoplasmic reticulum, nucleus	65.02	66.0
TraesCS3B01G518200.1	Wheat	cytosol	42.86	65.91
TraesCS4D01G164400.1	Wheat	nucleus	66.5	65.22
TraesCS3D01G470600.2	Wheat	cytosol	60.59	64.06
TraesCS3B01G518300.1	Wheat	cytosol, nucleus, plastid	62.07	63.32
TraesCS3A01G474600.1	Wheat	cytosol	62.07	63.32
TraesCS3A01G474200.1	Wheat	nucleus	61.58	63.13
TraesCS3B01G517400.1	Wheat	cytosol	61.58	62.81
TraesCSU01G140100.1	Wheat	nucleus	61.58	62.81
HORVU3Hr1G102520.6	Barley	cytosol, nucleus	62.56	61.35
TraesCS3D01G470500.1	Wheat	cytosol, nucleus, plastid	56.16	60.64
HORVU2Hr1G015260.1	Barley	cytosol, nucleus, plastid	60.1	60.4
CDY31852	Canola	cytosol, nucleus, plastid	60.59	58.85
TraesCS3A01G474800.1	Wheat	cytosol, nucleus, plastid	57.64	57.92
CDY01344	Canola	cytosol, nucleus, plastid	58.62	57.77
CDX90758	Canola	cytosol, nucleus, plastid	59.11	57.69
CDY05102	Canola	cytosol, nucleus, plastid	57.64	57.35
TraesCS3B01G518400.1	Wheat	cytosol	54.68	56.63
TraesCSU01G140000.1	Wheat	nucleus	56.16	56.16
GSMUA_Achr5P17540_001	Banana	endoplasmic reticulum, extracellular, golgi	66.01	56.07
CDX86860	Canola	cytosol	57.14	54.72
TraesCS3B01G517500.1	Wheat	cytosol, golgi, nucleus	53.2	48.0
CDX99543	Canola	nucleus	39.41	44.44
CDY54248	Canola	cytosol	45.81	41.89

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.1.2.1.1	Gene3D:2.20.70.30	UniProt:A0A078HZH3	EnsemblPlants:CDY42148	ProteinID:CDY42148
ProteinID:CDY42148.1	InterPro:EGD2/NACA	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005854	EnsemblPlantsGene:GSBRNA2T00074330001	InterPro:IPR002715	InterPro:IPR038187	InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom
PFAM:PF01849	PIRSF:PIRSF015901	PFscan:PS51151	PANTHER:PTHR21713	PANTHER:PTHR21713:SF16	SMART:SM01407
UniParc:UPI0004EDFE3B	SEG:seg	:	:	:	:

Description

BnaC05g40710DBnaC05g40710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZH3]

Coordinates

chrLK032516:+:103223..104564

Molecular Weight (calculated)

21990.4 Da

IEP (calculated)

4.085

GRAVY (calculated)

-0.720

Length

203 amino acids

Sequence
(BLAST)

001: MTTEEKEILA AKLEEQKIDL DKPEVEDADD NDEDDSEDDD KDDDAEGQDG EGGKSKQSRS EKKSRKAMLK LGMKPITGVS RVTIKKSKNI MFVISKPDVF
101: KSPASDTYVI FGEAKIEDLS SQIQSQAAEQ FKAPDLSNVV SQGESSSSAA VVQDDDEEID EDGVDAKDVE LVMTQAGVTR PKAVKALKAA DGDIVTAIME
201: LTT

Best Arabidopsis Sequence Match ( AT3G12390.1 )
(BLAST)

001: MTTEEKEILA AKLEEQKIDL DKPEVEDDDD NEDDDSDDDD KDDDEADGLD GEAGGKSKQS RSEKKSRKAM LKLGMKPITG VSRVTVKKSK NILFVISKPD
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT

Arabidopsis Description

Nascent polypeptide-associated complex subunit alpha-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.