Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G518000.1 | Wheat | cytosol, nucleus, plastid | 92.11 | 86.21 |
| HORVU3Hr1G102520.6 | Barley | cytosol, nucleus | 88.42 | 81.16 |
| TraesCS3B01G518200.1 | Wheat | cytosol | 54.74 | 78.79 |
| TraesCS3A01G474600.1 | Wheat | cytosol | 75.79 | 72.36 |
| Os01t0938900-02 | Rice | nucleus | 75.26 | 70.79 |
| TraesCS3A01G474200.1 | Wheat | nucleus | 73.68 | 70.71 |
| GSMUA_Achr10P... | Banana | nucleus | 73.16 | 69.5 |
| KRH66666 | Soybean | endoplasmic reticulum | 70.53 | 67.68 |
| Solyc10g078150.1.1 | Tomato | nucleus | 70.0 | 67.17 |
| Solyc10g081030.1.1 | Tomato | nucleus | 70.0 | 66.83 |
| KRH66664 | Soybean | endoplasmic reticulum | 71.05 | 66.5 |
| VIT_13s0067g00710.t01 | Wine grape | nucleus | 70.53 | 66.34 |
| PGSC0003DMT400018552 | Potato | nucleus | 68.95 | 66.16 |
| TraesCS3A01G474800.1 | Wheat | cytosol, nucleus, plastid | 69.47 | 65.35 |
| GSMUA_Achr1P11330_001 | Banana | plasma membrane | 68.42 | 65.0 |
| KRG95031 | Soybean | endoplasmic reticulum | 68.95 | 64.85 |
| VIT_08s0040g00600.t01 | Wine grape | cytosol | 68.42 | 64.36 |
| AT5G13850.1 | Thale cress | cytosol | 68.42 | 63.73 |
| CDX73823 | Canola | cytosol | 67.37 | 63.68 |
| CDY00769 | Canola | cytosol | 67.37 | 63.68 |
| AT3G12390.1 | Thale cress | cytosol | 67.89 | 63.55 |
| KRG95032 | Soybean | nucleus | 68.42 | 63.41 |
| CDY42148 | Canola | nucleus | 66.84 | 62.56 |
| Bra001450.1-P | Field mustard | cytosol | 61.05 | 61.38 |
| CDY08433 | Canola | plasma membrane | 65.26 | 60.78 |
| Bra034757.1-P | Field mustard | cytosol | 65.26 | 60.78 |
| CDY50549 | Canola | nucleus | 63.16 | 59.41 |
| CDY09831 | Canola | nucleus | 64.21 | 59.22 |
| CDX69622 | Canola | cytosol | 64.21 | 59.22 |
| CDY71160 | Canola | nucleus | 62.63 | 58.91 |
| Bra008797.1-P | Field mustard | cytosol | 64.21 | 58.65 |
| TraesCS4A01G138000.1 | Wheat | plastid, unclear | 64.21 | 58.65 |
| Bra038716.1-P | Field mustard | cytosol | 41.05 | 58.65 |
| PGSC0003DMT400072220 | Potato | cytosol, endoplasmic reticulum, nucleus | 61.58 | 58.5 |
| GSMUA_Achr5P17540_001 | Banana | endoplasmic reticulum, extracellular, golgi | 71.05 | 56.49 |
| TraesCS5A01G516100.1 | Wheat | nucleus | 57.37 | 49.1 |
| TraesCS3A01G474900.1 | Wheat | cytosol | 31.58 | 42.55 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G474500.1 | EnsemblPlantsGene:TraesCS3A01G474500 | Gene3D:1.10.8.10 | Gene3D:2.20.70.30 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005854 | InterPro:EGD2/NACA | InterPro:IPR002715 | InterPro:IPR038187 |
| InterPro:NAC_A/B_dom_sf | InterPro:Nas_poly-pep-assoc_cplx_dom | PANTHER:PTHR21713 | PANTHER:PTHR21713:SF16 | PFAM:PF01849 | PFscan:PS51151 |
| PIRSF:PIRSF015901 | SEG:seg | SMART:SM01407 | MapMan:19.1.2.1.1 | : | : |
Description
No Description!
Coordinates
chr3A:+:705948866..705950688
Molecular Weight (calculated)
20530.7 Da
IEP (calculated)
4.247
GRAVY (calculated)
-0.724
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTTVPCNGD EPIVEDDDDD DEDDDEDEDE KDDDGVAGVD ASGRSRQSRS EKKSRKAMEK LGMKAITGVS RVTIKKNKSV LFVLSKPDVF KSSNSDTYVM
101: FGEAKIEDLS TQLHSQAAEQ FKAPSPSSVI SKGEPSMAAA HDDEEVDETG VDKKDVELVM TQASVPRSRT VKALKAAGGD IVSAIMELTN
101: FGEAKIEDLS TQLHSQAAEQ FKAPSPSSVI SKGEPSMAAA HDDEEVDETG VDKKDVELVM TQASVPRSRT VKALKAAGGD IVSAIMELTN
001: MTTEEKEILA AKLEEQKIDL DKPEVEDDDD NEDDDSDDDD KDDDEADGLD GEAGGKSKQS RSEKKSRKAM LKLGMKPITG VSRVTVKKSK NILFVISKPD
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT
Arabidopsis Description
Nascent polypeptide-associated complex subunit alpha-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHG9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.