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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 extracellular: 20496099
extracellular: 22364583
plastid: 22908117
nucleus: 25464976
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20496099 doi
D Dahal, A Pich, HP Braun, K Wydra
Institute for Plant Diseases and Plant Protection, Faculty of Natural Sciences, Leibniz Universität Hannover, Herrenhäuser Str.2, 30419 Hannover, Germany. dahal@ipp.uni-hannover.de
msms PMID: 29145071 doi
P Ibort, H Imai, M Uemura, R Aroca
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 22364583 doi
P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez
Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc10g078150.1.1 Tomato nucleus 89.45 89.9
PGSC0003DMT400072220 Potato cytosol, endoplasmic reticulum, nucleus 85.43 85.0
GSMUA_Achr1P11330_001 Banana plasma membrane 83.92 83.5
GSMUA_Achr10P... Banana nucleus 83.42 83.0
KRH66666 Soybean endoplasmic reticulum 80.9 81.31
VIT_08s0040g00600.t01 Wine grape cytosol 81.91 80.69
KRG95031 Soybean endoplasmic reticulum 79.9 78.71
KRH66664 Soybean endoplasmic reticulum 79.4 77.83
Os01t0938900-02 Rice nucleus 78.39 77.23
KRG95032 Soybean nucleus 78.89 76.59
TraesCS1D01G236500.1 Wheat cytosol 78.39 76.1
AT3G12390.1 Thale cress cytosol 77.39 75.86
HORVU1Hr1G057970.2 Barley nucleus 79.4 75.6
Bra038716.1-P Field mustard cytosol 50.25 75.19
TraesCS1B01G248000.1 Wheat golgi, plastid, unclear 77.39 75.12
EES15306 Sorghum nucleus 77.39 74.4
Zm00001d047477_P001 Maize plastid 75.88 74.38
AT5G13850.1 Thale cress cytosol 75.88 74.02
Os05t0373700-01 Rice extracellular, golgi, plasma membrane, plastid 75.88 73.66
EER94856 Sorghum nucleus 76.38 73.43
CDY50549 Canola nucleus 74.37 73.27
CDY71160 Canola nucleus 73.87 72.77
CDY00769 Canola cytosol 73.37 72.64
CDX73823 Canola cytosol 73.37 72.64
Bra001450.1-P Field mustard cytosol 68.34 71.96
CDY09831 Canola nucleus 74.37 71.84
TraesCS4D01G164400.1 Wheat nucleus 74.37 71.5
Zm00001d029173_P004 Maize nucleus 74.37 71.5
TraesCS4B01G154200.1 Wheat nucleus 73.37 70.87
CDX69622 Canola cytosol 73.37 70.87
TraesCS4A01G138000.1 Wheat plastid, unclear 73.87 70.67
CDY08433 Canola plasma membrane 72.36 70.59
Bra034757.1-P Field mustard cytosol 72.36 70.59
Zm00001d049830_P002 Maize extracellular 73.37 70.19
Bra008797.1-P Field mustard cytosol 73.37 70.19
TraesCS3A01G474500.1 Wheat nucleus 66.83 70.0
CDY42148 Canola nucleus 70.85 69.46
TraesCS3B01G518000.1 Wheat cytosol, nucleus, plastid 69.85 68.47
TraesCS3B01G518200.1 Wheat cytosol 45.23 68.18
TraesCS3B01G518300.1 Wheat cytosol, nucleus, plastid 67.84 67.84
TraesCS3D01G470600.2 Wheat cytosol 64.82 67.19
TraesCS3A01G474200.1 Wheat nucleus 66.83 67.17
HORVU3Hr1G102520.6 Barley cytosol, nucleus 69.85 67.15
TraesCS3D01G470500.1 Wheat cytosol, nucleus, plastid 62.81 66.49
TraesCS3B01G517400.1 Wheat cytosol 64.82 64.82
TraesCSU01G140100.1 Wheat nucleus 64.32 64.32
TraesCS3A01G474600.1 Wheat cytosol 64.32 64.32
Solyc03g080160.2.1 Tomato nucleus 65.33 63.73
TraesCS3B01G518400.1 Wheat cytosol 61.81 62.76
HORVU2Hr1G015260.1 Barley cytosol, nucleus, plastid 62.31 61.39
TraesCS3A01G474800.1 Wheat cytosol, nucleus, plastid 59.8 58.91
TraesCSU01G140000.1 Wheat nucleus 57.29 56.16
TraesCS3B01G517500.1 Wheat cytosol, golgi, nucleus 55.28 48.89
Protein Annotations
Gene3D:1.10.8.10MapMan:19.1.2.1.1Gene3D:2.20.70.30InterPro:EGD2/NACAGO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005854InterPro:IPR002715InterPro:IPR038187UniProt:K4D2Z0
InterPro:NAC_A/B_dom_sfInterPro:Nas_poly-pep-assoc_cplx_domPFAM:PF01849PIRSF:PIRSF015901PFscan:PS51151PANTHER:PTHR21713
PANTHER:PTHR21713:SF16SMART:SM01407EnsemblPlantsGene:Solyc10g081030.1EnsemblPlants:Solyc10g081030.1.1UniParc:UPI0002769781SEG:seg
Description
No Description!
Coordinates
chr10:+:62210385..62213752
Molecular Weight (calculated)
21763.3 Da
IEP (calculated)
4.145
GRAVY (calculated)
-0.723
Length
199 amino acids
Sequence
(BLAST)
001: MTAQSQEELL AAHLEQQKLE SEVPIIEDEE DDDDDDDDEK DDDDAEELGD GSGRSKQSRS EKKSRKAMLK LGMKPIPGVS RVTVKKSKNI LFVISKPDVF
101: KSPNSDTYVI FGEAKIEDLS SQLQSQAAEQ FKAPNLSNVI SKPEPSTVAQ DDEDVDETGV EPKDIELVMT QAGVSRPKAV KALKAAEGDI VSAIMELTN
Best Arabidopsis Sequence Match ( AT3G12390.1 )
(BLAST)
001: MTTEEKEILA AKLEEQKIDL DKPEVEDDDD NEDDDSDDDD KDDDEADGLD GEAGGKSKQS RSEKKSRKAM LKLGMKPITG VSRVTVKKSK NILFVISKPD
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT
Arabidopsis Description
Nascent polypeptide-associated complex subunit alpha-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHG9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.