Factsheet for TraesCS3A01G474800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G470500.1	Wheat	cytosol, nucleus, plastid	73.27	78.72
TraesCS3B01G518400.1	Wheat	cytosol	73.76	76.02
TraesCS3A01G474600.1	Wheat	cytosol	70.79	71.86
HORVU2Hr1G015260.1	Barley	cytosol, nucleus, plastid	71.29	71.29
TraesCS3A01G474500.1	Wheat	nucleus	65.35	69.47
TraesCS3A01G474200.1	Wheat	nucleus	66.83	68.18
Os01t0938900-02	Rice	nucleus	61.39	61.39
KRH66666	Soybean	endoplasmic reticulum	59.9	61.11
GSMUA_Achr10P...	Banana	nucleus	60.4	61.0
VIT_13s0067g00710.t01	Wine grape	nucleus	60.89	60.89
Solyc10g081030.1.1	Tomato	nucleus	58.91	59.8
VIT_08s0040g00600.t01	Wine grape	cytosol	59.41	59.41
Solyc10g078150.1.1	Tomato	nucleus	57.92	59.09
GSMUA_Achr1P11330_001	Banana	plasma membrane	58.42	59.0
CDY00769	Canola	cytosol	57.92	58.21
CDX73823	Canola	cytosol	57.92	58.21
KRH66664	Soybean	endoplasmic reticulum	58.42	58.13
PGSC0003DMT400018552	Potato	nucleus	56.93	58.08
KRG95031	Soybean	endoplasmic reticulum	57.92	57.92
AT3G12390.1	Thale cress	cytosol	57.92	57.64
CDY42148	Canola	nucleus	57.92	57.64
CDX69622	Canola	cytosol	57.92	56.8
Bra001450.1-P	Field mustard	cytosol	52.97	56.61
CDY08433	Canola	plasma membrane	56.93	56.37
Bra034757.1-P	Field mustard	cytosol	56.93	56.37
Bra008797.1-P	Field mustard	cytosol	57.92	56.25
AT5G13850.1	Thale cress	cytosol	56.44	55.88
Bra038716.1-P	Field mustard	cytosol	36.63	55.64
CDY09831	Canola	nucleus	55.94	54.85
KRG95032	Soybean	nucleus	55.45	54.63
CDY71160	Canola	nucleus	53.47	53.47
PGSC0003DMT400072220	Potato	cytosol, endoplasmic reticulum, nucleus	52.48	53.0
CDY50549	Canola	nucleus	52.97	52.97
TraesCS4A01G138000.1	Wheat	plastid, unclear	54.46	52.88
GSMUA_Achr5P17540_001	Banana	endoplasmic reticulum, extracellular, golgi	57.92	48.95
TraesCS5A01G516100.1	Wheat	nucleus	49.01	44.59
TraesCS3A01G474900.1	Wheat	cytosol	28.71	41.13

Protein Annotations

EnsemblPlants:TraesCS3A01G474800.1	EnsemblPlantsGene:TraesCS3A01G474800	Gene3D:1.10.8.10	Gene3D:2.20.70.30	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005854	InterPro:EGD2/NACA	InterPro:IPR002715	InterPro:IPR038187
InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PANTHER:PTHR21713	PANTHER:PTHR21713:SF16	PFAM:PF01849	PFscan:PS51151
PIRSF:PIRSF015901	SEG:seg	SMART:SM01407	TIGR:cd14358	MapMan:19.1.2.1.1	:

Description

No Description!

Coordinates

chr3A:+:706257225..706260103

Molecular Weight (calculated)

22380.0 Da

IEP (calculated)

4.093

GRAVY (calculated)

-0.613

Length

202 amino acids

Sequence
(BLAST)

001: MTAAELLRAQ LEEHNIEEDE PILQDDDNDD EYDDEDEDEK DDDDVEDMFK FCRGDASARS RSEKKCRKAM ERLGMKAITG VSRVTIKQSK TATFVLLKPD
101: VFKSSQSETY VMFGVVKMED MDAQLLTEAA EQSKASVPSS IISKGEQSVA EAQDDEVVDE TGIDKKDVEL VMAQAPVSRS RAVKALKAAD GDIVSAIMEL
201: TN

Best Arabidopsis Sequence Match ( AT3G12390.1 )
(BLAST)

001: MTTEEKEILA AKLEEQKIDL DKPEVEDDDD NEDDDSDDDD KDDDEADGLD GEAGGKSKQS RSEKKSRKAM LKLGMKPITG VSRVTVKKSK NILFVISKPD
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT

Arabidopsis Description

Nascent polypeptide-associated complex subunit alpha-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.