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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH64285 Soybean endoplasmic reticulum 93.27 93.27
KRH53645 Soybean endoplasmic reticulum 83.86 83.11
KRH64284 Soybean endoplasmic reticulum 78.48 80.28
Solyc03g080160.2.1 Tomato nucleus 68.16 74.51
VIT_16s0098g00830.t01 Wine grape cytosol, nucleus, plastid 69.96 74.29
PGSC0003DMT400001566 Potato cytosol 66.37 72.55
CDY31855 Canola cytosol 44.39 72.26
KRH66666 Soybean endoplasmic reticulum 58.3 65.66
KRG95031 Soybean endoplasmic reticulum 59.19 65.35
TraesCS4D01G342400.1 Wheat nucleus 65.02 65.32
TraesCS4B01G347400.1 Wheat nucleus 64.13 65.0
Os03t0121700-01 Rice plasma membrane 64.13 64.71
TraesCS5A01G516100.1 Wheat nucleus 64.13 64.41
CDY31852 Canola cytosol, nucleus, plastid 59.64 63.64
KRH66664 Soybean endoplasmic reticulum 57.85 63.55
KRG95032 Soybean nucleus 58.3 63.41
Zm00001d048479_P002 Maize plastid 64.57 63.16
EER95617 Sorghum cytosol 63.23 62.39
Bra037920.1-P Field mustard cytosol 58.74 61.79
CDY01344 Canola cytosol, nucleus, plastid 56.95 61.65
CDX90758 Canola cytosol, nucleus, plastid 57.4 61.54
Bra000711.1-P Field mustard cytosol, nucleus, plastid 57.4 61.54
Bra012259.1-P Field mustard cytosol 52.91 61.46
CDX86860 Canola cytosol 58.3 61.32
CDY05102 Canola cytosol, nucleus, plastid 56.05 61.27
AT3G49470.2 Thale cress cytosol 63.68 61.21
CDX99543 Canola nucleus 39.91 49.44
GSMUA_Achr11P... Banana cytosol 34.53 46.67
Os07t0407300-00 Rice cytosol, nucleus, plastid 24.66 45.08
CDY54248 Canola cytosol 42.15 42.34
HORVU3Hr1G102230.1 Barley nucleus 17.49 39.39
Os01t0698900-00 Rice plasma membrane 52.91 30.89
Protein Annotations
Gene3D:1.10.8.10EntrezGene:100807402MapMan:19.1.2.1.1Gene3D:2.20.70.30EMBL:ACUP02003480InterPro:EGD2/NACA
EnsemblPlantsGene:GLYMA_06G137700GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005854
UniProt:I1KB25InterPro:IPR002715InterPro:IPR038187EnsemblPlants:KRH53644ProteinID:KRH53644ProteinID:KRH53644.1
InterPro:NAC_A/B_dom_sfInterPro:Nas_poly-pep-assoc_cplx_domPFAM:PF01849PIRSF:PIRSF015901PFscan:PS51151PANTHER:PTHR21713
PANTHER:PTHR21713:SF7SMART:SM01407UniParc:UPI0002339E73SEG:seg::
Description
hypothetical protein
Coordinates
chr6:+:11252653..11255357
Molecular Weight (calculated)
24263.8 Da
IEP (calculated)
4.041
GRAVY (calculated)
-0.795
Length
223 amino acids
Sequence
(BLAST)
001: MSPGPVVDAS PEVEAEQQLP SVDDATQLKK SQPQEDDAPV VEDVRDDDKD DDDEDDDDDD EDDKEDDALG GAEGSKQSRS EKKSRKAMLK LGLKPVTGVS
101: RVTIKRTKNI LFFISKPDVF KSPNSETYVI FGEAKIEDLS SQLQTQAAQQ FRMPDMGSVT AKQEDAAAAA VQPEEEEEVD ETGVEPHDID LVMTQAGVSR
201: SKAVKALKTH NGDIVGAIME LTT
Best Arabidopsis Sequence Match ( AT3G49470.1 )
(BLAST)
001: MSPPPAVVTE SADGQPEQPP VTAIAEELEK KLQTDEPIVE DVKDDEDDDD DDEEEEDDDA QGVSGSSKQS RSEKKSRKAM LKLGMKPVTG VSRVTIKRTK
101: NVLFFISKPD VFKSPHSETY VIFGEAKIED LSSQLQTQAA QQFRMPEIGA TSQRAEASTA TVEAQVEEDE EEIDETGVEA RDIDLVMTQA GVSRSKAVKA
201: LKSHDGDIVS AIMELTT
Arabidopsis Description
NACA2Nascent polypeptide-associated complex subunit alpha-like protein 2 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LR04]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.