Factsheet for Bra039299.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000711.1-P
Bra001450.1-P
Bra012259.1-P
Bra034757.1-P
Bra038716.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42395.1	Bra000711.1-P	AT1G33040.1	21798944
AT2G42395.1	Bra012259.1-P	AT1G33040.1	21798944
AT2G42395.1	Bra001450.1-P	AT3G12390.1	21798944
AT2G42395.1	Bra034757.1-P	AT3G12390.1	21798944
AT2G42395.1	Bra038716.1-P	AT3G12390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37080	Canola	nucleus	99.26	99.26
AT2G42395.1	Thale cress	nucleus	37.04	48.08
Bra039298.1-P	Field mustard	nucleus	27.41	25.69

Protein Annotations

EnsemblPlants:Bra039299.1	EnsemblPlants:Bra039299.1-P	EnsemblPlantsGene:Bra039299	SEG:seg	UniParc:UPI000254445E	UniProt:M4FDX8
MapMan:35.2	:	:	:	:	:

Description

AT2G42395 (E=7e-018) | unknown protein

Coordinates

chrA04:+:18691844..18692346

Molecular Weight (calculated)

15352.9 Da

IEP (calculated)

8.701

GRAVY (calculated)

-1.050

Length

135 amino acids

Sequence
(BLAST)

001: METTQRHKDD EEEAQIPKTE FETSSEVESD KKAERSTTKL DKQAIPKKSP NLTKEEKTIK DSFFYCCQNF FTLPEMIDYM KVNHGLPKTT VTNVFRELLT
101: GRNGESYLRA SQRRALQRSS NGTTSSTVGS SSSTK

Best Arabidopsis Sequence Match ( AT2G42395.1 )
(BLAST)

001: MAKNSGSSFE AEKSEGKCVT TTTEAQQSSQ PVLSKEEEKV RDSYLFCCEN FYTLPEMINF MKEIHGVEQT TVTKVFRELL KGRKAEAYLR ESQKRMKART
101: TTTT

Arabidopsis Description

At2g42395 [Source:UniProtKB/TrEMBL;Acc:Q84TF7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.