Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039299.1-P | Field mustard | nucleus | 99.26 | 99.26 |
| CDY27341 | Canola | nucleus | 93.33 | 93.33 |
| AT2G42395.1 | Thale cress | nucleus | 37.04 | 48.08 |
| CDY27340 | Canola | nucleus | 25.19 | 26.98 |
| CDY37081 | Canola | nucleus | 27.41 | 25.69 |
Protein Annotations
| EnsemblPlants:CDY37080 | EnsemblPlantsGene:GSBRNA2T00063289001 | ProteinID:CDY37080 | ProteinID:CDY37080.1 | SEG:seg | UniParc:UPI0004EE8F20 |
| UniProt:A0A078HFD2 | MapMan:35.2 | : | : | : | : |
Description
BnaA04g26580DBnaA04g26580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFD2]
Coordinates
chrLK032390:+:304368..304870
Molecular Weight (calculated)
15294.8 Da
IEP (calculated)
9.141
GRAVY (calculated)
-1.010
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTQRHKDD EEEAQIPKTE FETSSEVESD KKAERSTTKL DKQAIPKKSP NLTKEEKTIK DSFFYCCQNF FTLPEMIDYM KVNHGLPKTT VTNVFRELLT
101: GRNGESYLRA SQRRALQRSS NGTTSSTVGS SSSTK
101: GRNGESYLRA SQRRALQRSS NGTTSSTVGS SSSTK
001: MAKNSGSSFE AEKSEGKCVT TTTEAQQSSQ PVLSKEEEKV RDSYLFCCEN FYTLPEMINF MKEIHGVEQT TVTKVFRELL KGRKAEAYLR ESQKRMKART
101: TTTT
101: TTTT
Arabidopsis Description
At2g42395 [Source:UniProtKB/TrEMBL;Acc:Q84TF7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.