Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37080 | Canola | nucleus | 93.33 | 93.33 |
| AT2G42395.1 | Thale cress | nucleus | 39.26 | 50.96 |
| CDY27340 | Canola | nucleus | 25.93 | 27.78 |
| CDY37081 | Canola | nucleus | 26.67 | 25.0 |
Protein Annotations
| EnsemblPlants:CDY27341 | EnsemblPlantsGene:GSBRNA2T00037278001 | ProteinID:CDY27341 | ProteinID:CDY27341.1 | SEG:seg | UniParc:UPI0004EBA90B |
| UniProt:A0A078GPU7 | MapMan:35.2 | : | : | : | : |
Description
BnaC04g50640DBnaC04g50640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GPU7]
Coordinates
chrLK032203:-:184711..185272
Molecular Weight (calculated)
15234.7 Da
IEP (calculated)
8.691
GRAVY (calculated)
-1.019
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MATAQRHNDE EEEAQIPKTE FETSSEVESD KKAERSTTKL DKQAIPKKSP NLTKEEKTIR DSYFYCCQNF FTLPEMIDYM KVNHGLPKTT VTNVFRELLT
101: GRNGEAYLRA SQRRGLQRSS NGTTSGSVGS SSSTK
101: GRNGEAYLRA SQRRGLQRSS NGTTSGSVGS SSSTK
001: MAKNSGSSFE AEKSEGKCVT TTTEAQQSSQ PVLSKEEEKV RDSYLFCCEN FYTLPEMINF MKEIHGVEQT TVTKVFRELL KGRKAEAYLR ESQKRMKART
101: TTTT
101: TTTT
Arabidopsis Description
At2g42395 [Source:UniProtKB/TrEMBL;Acc:Q84TF7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.