Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37081 | Canola | nucleus | 81.75 | 71.53 |
| AT2G42395.1 | Thale cress | nucleus | 27.78 | 33.65 |
| CDY27341 | Canola | nucleus | 27.78 | 25.93 |
| CDY37080 | Canola | nucleus | 26.98 | 25.19 |
Protein Annotations
| EnsemblPlants:CDY27340 | EnsemblPlantsGene:GSBRNA2T00037277001 | ProteinID:CDY27340 | ProteinID:CDY27340.1 | SEG:seg | UniParc:UPI0004EF25A0 |
| UniProt:A0A078GL68 | MapMan:35.2 | : | : | : | : |
Description
BnaC04g50650DBnaC04g50650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GL68]
Coordinates
chrLK032203:+:184075..184551
Molecular Weight (calculated)
14316.0 Da
IEP (calculated)
10.594
GRAVY (calculated)
-0.979
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKKKSNKEK GGSSLNNNDA DVASSSGRSG RGRQSQATNP LTVGQAIMKA NYHSCCRQFY TLQELIEFMT TRHRGLTAET VTKVFREMLK RINAEMYLRA
101: AQYHSTVRKI ERKRRESDDN LSTPPS
101: AQYHSTVRKI ERKRRESDDN LSTPPS
001: MAKNSGSSFE AEKSEGKCVT TTTEAQQSSQ PVLSKEEEKV RDSYLFCCEN FYTLPEMINF MKEIHGVEQT TVTKVFRELL KGRKAEAYLR ESQKRMKART
101: TTTT
101: TTTT
Arabidopsis Description
At2g42395 [Source:UniProtKB/TrEMBL;Acc:Q84TF7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.