Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039298.1-P | Field mustard | nucleus | 95.83 | 95.83 |
| CDY27340 | Canola | nucleus | 71.53 | 81.75 |
| AT2G42395.1 | Thale cress | nucleus | 24.31 | 33.65 |
| CDY37080 | Canola | nucleus | 25.69 | 27.41 |
| CDY27341 | Canola | nucleus | 25.0 | 26.67 |
Protein Annotations
| EnsemblPlants:CDY37081 | EnsemblPlantsGene:GSBRNA2T00063290001 | ProteinID:CDY37081 | ProteinID:CDY37081.1 | SEG:seg | UniParc:UPI0004EF11F9 |
| UniProt:A0A078HHA3 | MapMan:35.2 | : | : | : | : |
Description
BnaA04g26590DBnaA04g26590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHA3]
Coordinates
chrLK032390:-:305098..305605
Molecular Weight (calculated)
15790.4 Da
IEP (calculated)
10.262
GRAVY (calculated)
-0.901
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKTKRKKEK GGSSSNNNDA ATASTSGRSG RGKQSQATNP LTVGQAIMKA NYHSCCRQFY TLPELIEFMT TRHRGLTAEM VTTVYREMLK SINAELYLRA
101: AQYHSTAREI ERKRRETADS VSTPRASTST TAPAQSDGDS SSSS
101: AQYHSTAREI ERKRRETADS VSTPRASTST TAPAQSDGDS SSSS
001: MAKNSGSSFE AEKSEGKCVT TTTEAQQSSQ PVLSKEEEKV RDSYLFCCEN FYTLPEMINF MKEIHGVEQT TVTKVFRELL KGRKAEAYLR ESQKRMKART
101: TTTT
101: TTTT
Arabidopsis Description
At2g42395 [Source:UniProtKB/TrEMBL;Acc:Q84TF7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.