Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27341 | Canola | nucleus | 50.96 | 39.26 |
| Bra039299.1-P | Field mustard | nucleus | 48.08 | 37.04 |
| CDY37080 | Canola | nucleus | 48.08 | 37.04 |
| CDY27340 | Canola | nucleus | 33.65 | 27.78 |
| Bra039298.1-P | Field mustard | nucleus | 34.62 | 25.0 |
| CDY37081 | Canola | nucleus | 33.65 | 24.31 |
Protein Annotations
| ArrayExpress:AT2G42395 | EMBL:AK227429 | EMBL:BT005839 | EnsemblPlants:AT2G42395.1 | EnsemblPlantsGene:AT2G42395 | EntrezGene:2745592 |
| GO:GO:0003674 | GO:GO:0005575 | GO:GO:0008150 | ProteinID:AEC10116.1 | ProteinID:OAP11251.1 | RefSeq:AT2G42395 |
| RefSeq:AT2G42395-TAIR-G | RefSeq:NP_973671.1 | TAIR:AT2G42395 | TAIR:AT2G42395.1 | UniParc:UPI0000060D63 | UniProt:A0A178W0N2 |
| UniProt:Q84TF7 | MapMan:35.2 | : | : | : | : |
Description
At2g42395 [Source:UniProtKB/TrEMBL;Acc:Q84TF7]
Coordinates
chr2:-:17653080..17654069
Molecular Weight (calculated)
11915.2 Da
IEP (calculated)
8.476
GRAVY (calculated)
-0.786
Length
104 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKNSGSSFE AEKSEGKCVT TTTEAQQSSQ PVLSKEEEKV RDSYLFCCEN FYTLPEMINF MKEIHGVEQT TVTKVFRELL KGRKAEAYLR ESQKRMKART
101: TTTT
101: TTTT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.