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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • plastid 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000711.1-P
Bra001450.1-P
Bra012259.1-P
Bra034757.1-P
Bra038716.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G42395.1 Bra000711.1-P AT1G33040.1 21798944
AT2G42395.1 Bra012259.1-P AT1G33040.1 21798944
AT2G42395.1 Bra001450.1-P AT3G12390.1 21798944
AT2G42395.1 Bra034757.1-P AT3G12390.1 21798944
AT2G42395.1 Bra038716.1-P AT3G12390.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY37081 Canola nucleus 95.83 95.83
AT2G42395.1 Thale cress nucleus 25.0 34.62
Bra039299.1-P Field mustard nucleus 25.69 27.41
Protein Annotations
EnsemblPlants:Bra039298.1EnsemblPlants:Bra039298.1-PEnsemblPlantsGene:Bra039298SEG:segUniParc:UPI000254445FUniProt:M4FDX7
MapMan:35.2:::::
Description
AT2G42395 (E=1e-009) | unknown protein
Coordinates
chrA04:-:18692573..18693128
Molecular Weight (calculated)
15864.5 Da
IEP (calculated)
10.448
GRAVY (calculated)
-0.900
Length
144 amino acids
Sequence
(BLAST)
001: MDKTKRNKEK GGSSSNNNDA ATASTSGRSG RGRQSQATNP LTVGQAIMKA NYHSCCRQFY TLPELIEFMT TRHRGLTAEM VTKVYREMLK SINAEMYLRA
101: AQYHSTARQI ERKRRETADS VSTLRASTST TAPAQSDGDS SSSS
Best Arabidopsis Sequence Match ( AT2G42395.1 )
(BLAST)
001: MAKNSGSSFE AEKSEGKCVT TTTEAQQSSQ PVLSKEEEKV RDSYLFCCEN FYTLPEMINF MKEIHGVEQT TVTKVFRELL KGRKAEAYLR ESQKRMKART
101: TTTT
Arabidopsis Description
At2g42395 [Source:UniProtKB/TrEMBL;Acc:Q84TF7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.