Factsheet for Bra026074.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
vacuole 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra010866.1-P
Bra012567.1-P
Bra013361.1-P
Bra020182.1-P
Bra026434.1-P
Bra027174.1-P
Bra032912.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16240.1	Bra010866.1-P	AT1G28490.1	21798944
AT1G16240.1	Bra032912.1-P	AT1G28490.1	21798944
AT1G16240.1	Bra027174.1-P	AT3G16310.1	21798944
AT1G16240.1	Bra012567.1-P	AT4G19030.1	21798944
AT1G16240.1	Bra013361.1-P	AT4G19030.1	21798944
AT1G16240.1	Bra026434.1-P	AT4G26455.1	21798944
AT1G16240.1	Bra002403.1-P	AT5G22290.1	21798944
AT1G16240.1	Bra006619.1-P	AT5G22290.1	21798944
AT1G16240.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35073	Canola	cytosol	100.0	100.0
CDY33349	Canola	cytosol	98.71	98.71
Bra026727.1-P	Field mustard	cytosol	94.4	93.99
AT1G16240.1	Thale cress	cytosol	87.93	87.93
Bra008425.1-P	Field mustard	cytosol	85.78	85.04
KRH46259	Soybean	endoplasmic reticulum, mitochondrion	75.0	76.32
KRH14303	Soybean	endoplasmic reticulum	75.0	75.0
VIT_00s0227g00170.t01	Wine grape	mitochondrion	48.28	71.79
VIT_00s0582g00030.t01	Wine grape	mitochondrion	48.28	71.79
VIT_19s0090g01300.t01	Wine grape	cytosol	73.28	70.83
PGSC0003DMT400057423	Potato	cytosol	71.12	70.82
Solyc07g065030.2.1	Tomato	plastid	63.79	70.81
Bra035128.1-P	Field mustard	cytosol	82.76	70.07
KRG98671	Soybean	endoplasmic reticulum	75.43	69.72
VIT_00s1613g00010.t01	Wine grape	cytosol	21.12	67.12
KXG27212	Sorghum	cytosol	66.38	66.67
Zm00001d050146_P001	Maize	extracellular, mitochondrion	65.95	66.23
Zm00001d002148_P002	Maize	cytosol	65.09	65.37
Os08t0277900-01	Rice	plasma membrane	65.09	65.09
VIT_00s2887g00010.t01	Wine grape	cytosol	13.36	64.58
Os02t0119400-01	Rice	plasma membrane	64.22	64.22
TraesCS5B01G069400.1	Wheat	cytosol	64.22	64.22
TraesCS5A01G062300.1	Wheat	cytosol	64.22	64.22
GSMUA_Achr6P34260_001	Banana	cytosol	64.22	63.95
TraesCS6A01G059100.1	Wheat	cytosol	63.36	63.36
TraesCS6B01G079400.1	Wheat	cytosol	62.93	62.93
TraesCSU01G121500.1	Wheat	cytosol	62.5	62.5
HORVU5Hr1G016680.2	Barley	cytosol, vacuole	64.22	61.57
AT1G16230.1	Thale cress	cytosol	49.14	59.07
Solyc12g014550.1.1	Tomato	cytosol	38.36	58.17
TraesCS5D01G073500.2	Wheat	cytosol	64.22	57.75
KRH73827	Soybean	plastid	16.81	56.52
AT1G16225.2	Thale cress	cytosol	49.14	51.12
HORVU6Hr1G011180.1	Barley	mitochondrion	62.07	47.68
PGSC0003DMT400033466	Potato	endoplasmic reticulum	54.74	47.39
HORVU4Hr1G023890.1	Barley	cytosol	14.66	39.53
GSMUA_Achr9P03240_001	Banana	cytosol	65.52	31.15

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.4.1	EnsemblPlantsGene:Bra026074	EnsemblPlants:Bra026074.1	EnsemblPlants:Bra026074.1-P	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0061025	InterPro:IPR000727	UniProt:M4EBB5	PFAM:PF05739	ScanProsite:PS00914
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF149	SMART:SM00397	SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS
TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000253F186	SEG:seg	:	:

Description

AT1G16240 (E=1e-103) SYP51, ATSYP51 | SYP51 (SYNTAXIN OF PLANTS 51); SNAP receptor

Coordinates

chrA06:-:6242504..6243630

Molecular Weight (calculated)

26057.7 Da

IEP (calculated)

9.149

GRAVY (calculated)

-0.326

Length

232 amino acids

Sequence
(BLAST)

001: MASSSDSWMR EYNEALKLAE DINGMISERN KSSLTGPDAQ RRASAIRRKI TIFGTRLESL QSLLAKIHGK PISEKEMNRR KDMIGNLRSQ ANQMASALNM
101: SNFANRDSLL GSEIKADDSM SRVASMDNQG IVGFQRQVMR EQDEGLEKLE ETVMSTKHIA LAVNEELGLQ TRLIDDLDYH VDVTDSRLRR VQKNLAVMNK
201: NMRSGCSCMS MLLSMLGIVG LAVVIWLLVK YL

Best Arabidopsis Sequence Match ( AT1G16240.2 )
(BLAST)

001: MASSSDSWMR AYNEALKLSE EINGMISERS SSAVTGPDAQ RRASAIRRKI TIFGNKLDSL QSLLAEIHGK PISEKEMNRR KDMVGNLRSK ANQMANALNM
101: SNFANRDSLL GPDIKPDDSM SRVTGMDNQG IVGYQRQVMR EQDEGLEQLE GTVMSTKHIA LAVSEELDLQ TRLIDDLDYH VDVTDSRLRR VQKSLAVMNK
201: NMRSGCSCMS MLLSVLGIVG LAVVIWMLVK YM

Arabidopsis Description

SYP51SYP51 [Source:UniProtKB/TrEMBL;Acc:A0A178WJ29]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.