Factsheet for GSMUA_Achr9P03240_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 1
cytosol 2
vacuole 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr3P04120_001
GSMUA_Achr4P01630_001
GSMUA_Achr4P08270_001
GSMUA_Achr4P10230_001
GSMUA_Achr4P15460_001
GSMUA_Achr6P14800_001
GSMUA_Achr6P18060_001
GSMUA_Achr6P25690_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16240.1	GSMUA_Achr10P...	AT1G28490.1	21798944
AT1G16240.1	GSMUA_Achr10P...	AT1G28490.1	21798944
AT1G16240.1	GSMUA_Achr6P18060_001	AT1G28490.1	21798944
AT1G16240.1	GSMUA_Achr6P25690_001	AT1G28490.1	21798944
AT1G16240.1	GSMUA_Achr4P08270_001	AT3G16310.1	21798944
AT1G16240.1	GSMUA_Achr4P15460_001	AT3G16310.1	21798944
AT1G16240.1	GSMUA_Achr6P14800_001	AT3G16310.1	21798944
AT1G16240.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944
AT1G16240.1	GSMUA_Achr10P...	AT4G26455.1	21798944
AT1G16240.1	GSMUA_Achr3P04120_001	AT4G26455.1	21798944
AT1G16240.1	GSMUA_Achr4P01630_001	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P34260_001	Banana	cytosol	42.01	87.98
Os08t0277900-01	Rice	plasma membrane	35.66	75.0
KXG27212	Sorghum	cytosol	35.45	74.89
Zm00001d050146_P001	Maize	extracellular, mitochondrion	35.25	74.46
Zm00001d002148_P002	Maize	cytosol	35.04	74.03
Os02t0119400-01	Rice	plasma membrane	35.04	73.71
VIT_00s0582g00030.t01	Wine grape	mitochondrion	23.36	73.08
VIT_00s0227g00170.t01	Wine grape	mitochondrion	23.36	73.08
TraesCS5B01G069400.1	Wheat	cytosol	34.43	72.41
TraesCS5A01G062300.1	Wheat	cytosol	34.43	72.41
KRH46259	Soybean	endoplasmic reticulum, mitochondrion	33.61	71.93
KRH14303	Soybean	endoplasmic reticulum	34.02	71.55
VIT_00s2887g00010.t01	Wine grape	cytosol	6.97	70.83
HORVU5Hr1G016680.2	Barley	cytosol, vacuole	34.63	69.83
TraesCS6B01G079400.1	Wheat	cytosol	33.2	69.83
TraesCS6A01G059100.1	Wheat	cytosol	32.79	68.97
VIT_19s0090g01300.t01	Wine grape	cytosol	33.81	68.75
TraesCSU01G121500.1	Wheat	cytosol	32.58	68.53
KRG98671	Soybean	endoplasmic reticulum	34.63	67.33
CDY49743	Canola	cytosol	32.17	67.09
Bra008425.1-P	Field mustard	cytosol	32.17	67.09
CDY52847	Canola	cytosol	31.56	66.09
CDY33349	Canola	cytosol	31.35	65.95
Bra026727.1-P	Field mustard	cytosol	31.35	65.67
Bra026074.1-P	Field mustard	cytosol	31.15	65.52
CDY35073	Canola	cytosol	31.15	65.52
CDY68585	Canola	cytosol	31.56	65.25
CDX81754	Canola	cytosol	31.15	65.24
TraesCS5D01G073500.2	Wheat	cytosol	34.43	65.12
VIT_00s1613g00010.t01	Wine grape	cytosol	9.63	64.38
Solyc10g081060.1.1	Tomato	plastid	29.3	64.13
AT1G16240.1	Thale cress	cytosol	30.33	63.79
PGSC0003DMT400072222	Potato	cytosol	30.12	63.64
AT1G79590.3	Thale cress	golgi, plasma membrane	32.17	59.47
Bra035128.1-P	Field mustard	cytosol	31.15	55.47
HORVU6Hr1G011180.1	Barley	mitochondrion	32.99	53.31
KRH73827	Soybean	plastid	7.38	52.17
AT1G16230.1	Thale cress	cytosol	19.88	50.26
HORVU4Hr1G023890.1	Barley	cytosol	7.79	44.19
AT1G16225.2	Thale cress	cytosol	19.67	43.05

Protein Annotations

EnsemblPlants:GSMUA_Achr9P03240_001	EnsemblPlants:GSMUA_Achr9T03240_001	EnsemblPlantsGene:GSMUA_Achr9G03240_001	Gene3D:1.20.5.110	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000727	InterPro:T_SNARE_dom	ncoils:Coil	PANTHER:PTHR19957	PANTHER:PTHR19957:SF148
PFAM:PF05739	PFscan:PS50192	SEG:seg	SMART:SM00397	SUPFAM:SSF58038	TMHMM:TMhelix
UniParc:UPI0002967ACE	UniProt:M0TX33	MapMan:22.7.4.1	:	:	:

Description

Syntaxin-52 [Source:GMGC_GENE;Acc:GSMUA_Achr9G03240_001]

Coordinates

chr9:-:2266901..2275764

Molecular Weight (calculated)

54086.3 Da

IEP (calculated)

11.204

GRAVY (calculated)

-0.340

Length

488 amino acids

Sequence
(BLAST)

001: MFRVRPTAIG YCDFHGPVGV CKKSSVRGHE AFSPRDLRAV HVCGERHRGR LFPPRDVRFH PGDPPRRHPP PGAHATLVRL RPRPAVRIPG ALGGGGGDDG
101: CAGAKRVHRG QAGRLLLRAG VHIGGPGLRG LRVSRPFRPR FRFPRRLVRP HRLPLPPPVT AGLGSSARRL PAARPPSMPR SANPKAPSVV GVCCLFGTFL
201: LSSAEEIDWD DSVDPFQLRL PNAAQKLYLV SRKGGTKARR EAILDRVLRA ILSKPMASSL DQWMREFNEA SKLSEDISAM MSERGSLPPS GPDTQRHLTA
301: MRRKITILRT RLDSLESLLS KLPSMQPIKD KDLHKRQEML ANMKSKANQM ASTLNMSNFG NREDLFGDGI KSADVMSRTS GLDNQGIVAL QRQVMREQDE
401: GLEKLEETVL STKHIALAVN EELDLHTRLI DDLDEHVDVT DSRLQRVQKR LAILNKRTKG GCSCMCLLLS VVAIVILVIV AWLLIKYL

Best Arabidopsis Sequence Match ( AT1G79590.3 )
(BLAST)

001: MGIADFGSQW LILFDSSFCF RRLIFFSTQQ SMASSSDPWM REYNEALKLS EDINGMMSER NASGLTGPDA QRRASAIRRK ITILGTRLDS LQSLLVKVPG
101: KQHVSEKEMN RRKDMVGNLR SKTNQVASAL NMSNFANRDS LFGTDLKPDD AINRVSGMDN QGIVVFQRQV MREQDEGLEK LEETVMSTKH IALAVNEELT
201: LQTRLIDDLD YDVDITDSRL RRVQKSLALM NKSMKSGCSC MSMLLSVLGI VGLALVIWLL VKYL

Arabidopsis Description

SYP52syntaxin of plants 52 [Source:TAIR;Acc:AT1G79590]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.