Factsheet for Bra008425.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
vacuole 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49743	Canola	cytosol	100.0	100.0
CDY68585	Canola	cytosol	97.44	96.61
Bra026727.1-P	Field mustard	cytosol	86.32	86.7
Bra026074.1-P	Field mustard	cytosol	85.04	85.78
AT1G79590.3	Thale cress	golgi, plasma membrane	93.16	82.58
Bra035128.1-P	Field mustard	cytosol	92.73	79.2
KRH46259	Soybean	endoplasmic reticulum, mitochondrion	75.64	77.63
KRH14303	Soybean	endoplasmic reticulum	75.64	76.29
Solyc07g065030.2.1	Tomato	plastid	65.81	73.68
VIT_19s0090g01300.t01	Wine grape	cytosol	75.21	73.33
VIT_00s0227g00170.t01	Wine grape	mitochondrion	48.72	73.08
VIT_00s0582g00030.t01	Wine grape	mitochondrion	48.72	73.08
VIT_00s2887g00010.t01	Wine grape	cytosol	14.96	72.92
PGSC0003DMT400057423	Potato	cytosol	71.79	72.1
KRG98671	Soybean	endoplasmic reticulum	75.21	70.12
VIT_00s1613g00010.t01	Wine grape	cytosol	20.94	67.12
KXG27212	Sorghum	cytosol	65.38	66.23
Zm00001d050146_P001	Maize	extracellular, mitochondrion	64.96	65.8
Zm00001d002148_P002	Maize	cytosol	64.96	65.8
Os08t0277900-01	Rice	plasma membrane	64.53	65.09
GSMUA_Achr6P34260_001	Banana	cytosol	63.68	63.95
TraesCS5A01G062300.1	Wheat	cytosol	63.25	63.79
TraesCS5B01G069400.1	Wheat	cytosol	63.25	63.79
Os02t0119400-01	Rice	plasma membrane	61.97	62.5
TraesCS6A01G059100.1	Wheat	cytosol	61.11	61.64
TraesCSU01G121500.1	Wheat	cytosol	61.11	61.64
TraesCS6B01G079400.1	Wheat	cytosol	60.68	61.21
HORVU5Hr1G016680.2	Barley	cytosol, vacuole	63.25	61.16
Solyc12g014550.1.1	Tomato	cytosol	39.32	60.13
TraesCS5D01G073500.2	Wheat	cytosol	63.25	57.36
KRH73827	Soybean	plastid	15.81	53.62
PGSC0003DMT400033466	Potato	endoplasmic reticulum	55.56	48.51
HORVU6Hr1G011180.1	Barley	mitochondrion	59.83	46.36
HORVU4Hr1G023890.1	Barley	cytosol	14.1	38.37
GSMUA_Achr9P03240_001	Banana	cytosol	67.09	32.17

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.4.1	EnsemblPlantsGene:Bra008425	EnsemblPlants:Bra008425.1	EnsemblPlants:Bra008425.1-P	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0061025	InterPro:IPR000727	UniProt:M4CW28	PFAM:PF05739	ScanProsite:PS00914
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF149	SMART:SM00397	SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS
TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI00025468A5	:	:	:

Description

AT1G79590 (E=3e-119) SYP52, ATSYP52 | SYP52 (SYNTAXIN OF PLANTS 52); SNAP receptor

Coordinates

chrA02:+:15563610..15564766

Molecular Weight (calculated)

26099.7 Da

IEP (calculated)

9.140

GRAVY (calculated)

-0.345

Length

234 amino acids

Sequence
(BLAST)

001: MASSSSDTWM REYNEALKLS EDINGMMSER NSSGLTGPDA QRRASAIRRK ITILGTRLDS LQSLLVKVPG KQHVSEKEMN RRKDMVGNLR SKANQVASAL
101: NMSNFANRDS LLGPDTKPDD AINRVSGMDN QGIVGFQRQI MREQDEGLEK LEETVMSTKH IALAVNEELT LQTRLIDDLD YHVDVTDSRL RRVQKSLAVM
201: NKNMKGGCSC MSMLLSVLGI VGLALVIWLL VKYL

Best Arabidopsis Sequence Match ( AT1G79590.1 )
(BLAST)

001: MASSSDPWMR EYNEALKLSE DINGMMSERN ASGLTGPDAQ RRASAIRRKI TILGTRLDSL QSLLVKVPGK QHVSEKEMNR RKDMVGNLRS KTNQVASALN
101: MSNFANRDSL FGTDLKPDDA INRVSGMDNQ GIVVFQRQVM REQDEGLEKL EETVMSTKHI ALAVNEELTL QTRLIDDLDY DVDITDSRLR RVQKSLALMN
201: KSMKSGCSCM SMLLSVLGIV GLALVIWLLV KYL

Arabidopsis Description

SYP52syntaxin of plants 52 [Source:TAIR;Acc:AT1G79590]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.