Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G059100.1 | Wheat | cytosol | 98.71 | 98.71 |
| TraesCSU01G121500.1 | Wheat | cytosol | 98.28 | 98.28 |
| Os02t0119400-01 | Rice | plasma membrane | 85.34 | 85.34 |
| KXG27212 | Sorghum | cytosol | 84.05 | 84.42 |
| Zm00001d050146_P001 | Maize | extracellular, mitochondrion | 82.76 | 83.12 |
| Zm00001d002148_P002 | Maize | cytosol | 82.33 | 82.68 |
| TraesCS5B01G069400.1 | Wheat | cytosol | 81.03 | 81.03 |
| HORVU6Hr1G011180.1 | Barley | mitochondrion | 96.55 | 74.17 |
| HORVU4Hr1G023890.1 | Barley | cytosol | 25.86 | 69.77 |
| GSMUA_Achr6P34260_001 | Banana | cytosol | 69.4 | 69.1 |
| VIT_00s0582g00030.t01 | Wine grape | mitochondrion | 46.12 | 68.59 |
| VIT_00s0227g00170.t01 | Wine grape | mitochondrion | 46.12 | 68.59 |
| KRH14303 | Soybean | endoplasmic reticulum | 67.24 | 67.24 |
| KRH46259 | Soybean | endoplasmic reticulum, mitochondrion | 65.09 | 66.23 |
| CDY35073 | Canola | cytosol | 62.93 | 62.93 |
| Bra026074.1-P | Field mustard | cytosol | 62.93 | 62.93 |
| CDY33349 | Canola | cytosol | 62.5 | 62.5 |
| VIT_19s0090g01300.t01 | Wine grape | cytosol | 64.66 | 62.5 |
| CDX81754 | Canola | cytosol | 61.64 | 61.37 |
| Bra026727.1-P | Field mustard | cytosol | 61.64 | 61.37 |
| KRG98671 | Soybean | endoplasmic reticulum | 66.38 | 61.35 |
| CDY52847 | Canola | cytosol | 61.21 | 60.94 |
| CDY49743 | Canola | cytosol | 61.21 | 60.68 |
| Bra008425.1-P | Field mustard | cytosol | 61.21 | 60.68 |
| VIT_00s2887g00010.t01 | Wine grape | cytosol | 12.5 | 60.42 |
| AT1G16240.1 | Thale cress | cytosol | 59.48 | 59.48 |
| VIT_00s1613g00010.t01 | Wine grape | cytosol | 18.53 | 58.9 |
| CDY68585 | Canola | cytosol | 59.91 | 58.9 |
| KRH73827 | Soybean | plastid | 17.24 | 57.97 |
| Solyc10g081060.1.1 | Tomato | plastid | 54.31 | 56.5 |
| PGSC0003DMT400072222 | Potato | cytosol | 56.03 | 56.28 |
| AT1G79590.3 | Thale cress | golgi, plasma membrane | 59.91 | 52.65 |
| Bra035128.1-P | Field mustard | cytosol | 58.19 | 49.27 |
| AT1G16230.1 | Thale cress | cytosol | 38.79 | 46.63 |
| AT1G16225.2 | Thale cress | cytosol | 38.79 | 40.36 |
| TraesCS4B01G347500.1 | Wheat | plastid | 43.97 | 39.53 |
| GSMUA_Achr9P03240_001 | Banana | cytosol | 69.83 | 33.2 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G079400.1 | EnsemblPlantsGene:TraesCS6B01G079400 | Gene3D:1.20.5.110 | InterPro:IPR000727 | InterPro:T_SNARE_dom | ncoils:Coil |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF148 | PFAM:PF05739 | PFscan:PS50192 | SEG:seg | SMART:SM00397 |
| SUPFAM:SSF58038 | TIGR:cd15841 | TMHMM:TMhelix | MapMan:22.7.4.1 | : | : |
Description
No Description!
Coordinates
chr6B:+:55994356..55996679
Molecular Weight (calculated)
25770.4 Da
IEP (calculated)
9.175
GRAVY (calculated)
-0.235
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSVDPWVR EYGEAARLAD DVAAMVADRA ALPQSGPEVM RHTSAIRRKI TILGTRLDSL EGMLARLPPK SITDKELHKR RDTLSNLKSR AKQMAESFNM
101: STFANREDLL GQSKKAADDM SRVAGLDNQG IVGLQRQIMK EQDEGLEKLE QTVLSTKHIA LAVNEELDLH ARLIDDLDDH VDGTNSRLQR VQKRLAVLNK
201: RAKGGCSCMS LLLSTVGIVM LVVIVWLLIK YL
101: STFANREDLL GQSKKAADDM SRVAGLDNQG IVGLQRQIMK EQDEGLEKLE QTVLSTKHIA LAVNEELDLH ARLIDDLDDH VDGTNSRLQR VQKRLAVLNK
201: RAKGGCSCMS LLLSTVGIVM LVVIVWLLIK YL
001: MASSSDSWMR AYNEALKLSE EINGMISERS SSAVTGPDAQ RRASAIRRKI TIFGNKLDSL QSLLAEIHGK PISEKEMNRR KDMVGNLRSK ANQMANALNM
101: SNFANRDSLL GPDIKPDDSM SRVTGMDNQG IVGYQRQVMR EQDEGLEQLE GTVMSTKHIA LAVSEELDLQ TRLIDDLDYH VDVTDSRLRR VQKSLAVMNK
201: NMRSGCSCMS MLLSVLGIVG LAVVIWMLVK YM
101: SNFANRDSLL GPDIKPDDSM SRVTGMDNQG IVGYQRQVMR EQDEGLEQLE GTVMSTKHIA LAVSEELDLQ TRLIDDLDYH VDVTDSRLRR VQKSLAVMNK
201: NMRSGCSCMS MLLSVLGIVG LAVVIWMLVK YM
Arabidopsis Description
SYP51SYP51 [Source:UniProtKB/TrEMBL;Acc:A0A178WJ29]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.