CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008425.1-P	Field mustard	cytosol	96.61	97.44
CDY49743	Canola	cytosol	96.61	97.44
CDY52847	Canola	cytosol	84.32	85.41
CDY35073	Canola	cytosol	83.05	84.48
CDX81754	Canola	cytosol	82.63	83.69
CDY33349	Canola	cytosol	82.2	83.62
AT1G79590.3	Thale cress	golgi, plasma membrane	90.68	81.06
Bra035128.1-P	Field mustard	cytosol	91.1	78.47
KRH46259	Soybean	endoplasmic reticulum, mitochondrion	73.73	76.32
KRH14303	Soybean	endoplasmic reticulum	73.73	75.0
VIT_00s2887g00010.t01	Wine grape	cytosol	14.83	72.92
Solyc07g065030.2.1	Tomato	plastid	63.98	72.25
VIT_19s0090g01300.t01	Wine grape	cytosol	73.31	72.08
VIT_00s0582g00030.t01	Wine grape	mitochondrion	47.03	71.15
VIT_00s0227g00170.t01	Wine grape	mitochondrion	47.03	71.15
PGSC0003DMT400057423	Potato	cytosol	69.92	70.82
KRG98671	Soybean	endoplasmic reticulum	73.31	68.92
VIT_00s1613g00010.t01	Wine grape	cytosol	20.76	67.12
KXG27212	Sorghum	cytosol	63.56	64.94
Os08t0277900-01	Rice	plasma membrane	63.56	64.66
Zm00001d050146_P001	Maize	extracellular, mitochondrion	63.14	64.5
Zm00001d002148_P002	Maize	cytosol	63.14	64.5
GSMUA_Achr6P34260_001	Banana	cytosol	61.86	62.66
TraesCS5A01G062300.1	Wheat	cytosol	61.44	62.5
TraesCS5B01G069400.1	Wheat	cytosol	61.44	62.5
Os02t0119400-01	Rice	plasma membrane	60.17	61.21
TraesCS6A01G059100.1	Wheat	cytosol	59.32	60.34
TraesCSU01G121500.1	Wheat	cytosol	59.32	60.34
Solyc12g014550.1.1	Tomato	cytosol	38.98	60.13
HORVU5Hr1G016680.2	Barley	cytosol, vacuole	61.44	59.92
TraesCS6B01G079400.1	Wheat	cytosol	58.9	59.91
TraesCS5D01G073500.2	Wheat	cytosol	61.44	56.2
KRH73827	Soybean	plastid	14.83	50.72
PGSC0003DMT400033466	Potato	endoplasmic reticulum	55.08	48.51
HORVU6Hr1G011180.1	Barley	mitochondrion	58.9	46.03
HORVU4Hr1G023890.1	Barley	cytosol	13.98	38.37
GSMUA_Achr9P03240_001	Banana	cytosol	65.25	31.56

Protein Annotations

EnsemblPlants:CDY68585	EnsemblPlantsGene:GSBRNA2T00075968001	Gene3D:1.20.5.110	GO:A0A078JQ56	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000727	InterPro:T_SNARE_dom	PANTHER:PTHR19957	PANTHER:PTHR19957:SF149	PFAM:PF05739
PFscan:PS50192	ProteinID:CDY68585	ProteinID:CDY68585.1	SMART:SM00397	SUPFAM:SSF58038	TMHMM:TMhelix
UniParc:UPI0004EDF62B	UniProt:A0A078JQ56	MapMan:22.7.4.1	:	:	:

Description

BnaAnng27700DBnaAnng27700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQ56]

Coordinates

chrLK037608:-:582..2197

Molecular Weight (calculated)

26275.9 Da

IEP (calculated)

9.140

GRAVY (calculated)

-0.337

Length

236 amino acids

Sequence
(BLAST)

001: MASSSSSDTW MREYNEALKL SEDINGMMSE RNSSALTGPD AQRRASAIRR KITILGTRLD SLQSLLVKVP GKQHVSEKEM NRRKDMVGNL RSKANQVASA
101: LNMSNFANRD SLLGPDTKPD DAINRVSGMD NQGIVGFQRQ IMRVEQDEGL EKLEETVMSS KHIALAVNEE LTLQTRLIDD LDYHVDVTDS RLRRVQKSLA
201: VMNKNMKGGC SCMSMLLSVL GIAGLALVIW LLVKYM

Best Arabidopsis Sequence Match ( AT1G79590.1 )
(BLAST)

001: MASSSDPWMR EYNEALKLSE DINGMMSERN ASGLTGPDAQ RRASAIRRKI TILGTRLDSL QSLLVKVPGK QHVSEKEMNR RKDMVGNLRS KTNQVASALN
101: MSNFANRDSL FGTDLKPDDA INRVSGMDNQ GIVVFQRQVM REQDEGLEKL EETVMSTKHI ALAVNEELTL QTRLIDDLDY DVDITDSRLR RVQKSLALMN
201: KSMKSGCSCM SMLLSVLGIV GLALVIWLLV KYL

Arabidopsis Description

SYP52syntaxin of plants 52 [Source:TAIR;Acc:AT1G79590]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.