Factsheet for HORVU5Hr1G016680.2

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, vacuole
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

vacuole: 16581873

msms PMID: 16581873 doi

A Endler, S Meyer, S Schelbert, T Schneider, W Weschke, SW Peters, F Keller, S Baginsky, E Martinoia, UG Schmidt

University of Zurich, Institute of Plant Biology, CH-8008 Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G076010.1
HORVU2Hr1G081800.3
HORVU3Hr1G026980.2
HORVU3Hr1G071060.1
HORVU3Hr1G111910.1
HORVU4Hr1G019940.1
HORVU5Hr1G071910.1
HORVU7Hr1G048940.3
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16240.1	HORVU3Hr1G111910.1	AT1G28490.1	21798944
AT1G16240.1	HORVU4Hr1G019940.1	AT1G28490.1	21798944
AT1G16240.1	HORVU1Hr1G076010.1	AT3G16310.1	21798944
AT1G16240.1	HORVU3Hr1G026980.2	AT3G16310.1	21798944
AT1G16240.1	HORVU3Hr1G071060.1	AT3G16310.1	21798944
AT1G16240.1	HORVU7Hr1G088900.1	AT4G19030.1	21798944
AT1G16240.1	HORVU2Hr1G081800.3	AT4G26455.1	21798944
AT1G16240.1	HORVU5Hr1G071910.1	AT4G26455.1	21798944
AT1G16240.1	HORVU7Hr1G048940.3	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G062300.1	Wheat	cytosol	95.87	100.0
TraesCS5B01G069400.1	Wheat	cytosol	95.87	100.0
KXG27212	Sorghum	cytosol	86.78	90.91
Zm00001d050146_P001	Maize	extracellular, mitochondrion	85.95	90.04
TraesCS5D01G073500.2	Wheat	cytosol	95.87	89.92
Zm00001d002148_P002	Maize	cytosol	85.54	89.61
Os08t0277900-01	Rice	plasma membrane	85.54	89.22
GSMUA_Achr6P34260_001	Banana	cytosol	67.77	70.39
KRH46259	Soybean	endoplasmic reticulum, mitochondrion	65.29	69.3
KRH14303	Soybean	endoplasmic reticulum	66.12	68.97
VIT_00s0227g00170.t01	Wine grape	mitochondrion	44.21	68.59
VIT_00s0582g00030.t01	Wine grape	mitochondrion	44.21	68.59
VIT_00s1613g00010.t01	Wine grape	cytosol	20.25	67.12
VIT_19s0090g01300.t01	Wine grape	cytosol	64.88	65.42
CDY33349	Canola	cytosol	61.98	64.66
VIT_00s2887g00010.t01	Wine grape	cytosol	12.81	64.58
CDY35073	Canola	cytosol	61.57	64.22
Bra026074.1-P	Field mustard	cytosol	61.57	64.22
KRG98671	Soybean	endoplasmic reticulum	66.53	64.14
CDY52847	Canola	cytosol	61.57	63.95
Bra026727.1-P	Field mustard	cytosol	61.16	63.52
Bra008425.1-P	Field mustard	cytosol	61.16	63.25
CDY49743	Canola	cytosol	61.16	63.25
CDX81754	Canola	cytosol	60.74	63.09
AT1G16240.1	Thale cress	cytosol	59.92	62.5
CDY68585	Canola	cytosol	59.92	61.44
HORVU6Hr1G011180.1	Barley	mitochondrion	76.45	61.26
PGSC0003DMT400072222	Potato	cytosol	57.85	60.61
Solyc10g081060.1.1	Tomato	plastid	55.37	60.09
AT1G79590.3	Thale cress	golgi, plasma membrane	60.33	55.3
KRH73827	Soybean	plastid	15.29	53.62
HORVU4Hr1G023890.1	Barley	cytosol	18.59	52.33
Bra035128.1-P	Field mustard	cytosol	59.09	52.19
AT1G16230.1	Thale cress	cytosol	38.84	48.7
AT1G16225.2	Thale cress	cytosol	38.43	41.7
GSMUA_Achr9P03240_001	Banana	cytosol	69.83	34.63

Protein Annotations

EMBL:AK353928	EMBL:AK363952	EnsemblPlants:HORVU5Hr1G016680.2	EnsemblPlantsGene:HORVU5Hr1G016680	Gene3D:1.20.5.110	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000727	InterPro:T_SNARE_dom	ncoils:Coil	PANTHER:PTHR19957
PANTHER:PTHR19957:SF148	PFAM:PF05739	PFscan:PS50192	SEG:seg	SMART:SM00397	SUPFAM:SSF58038
TMHMM:TMhelix	UniParc:UPI000B483C9D	UniProt:A0A287QGL6	MapMan:22.7.4.1	:	:

Description

No Description!

Coordinates

chrchr5H:+:62507406..62509615

Molecular Weight (calculated)

27077.1 Da

IEP (calculated)

9.439

GRAVY (calculated)

-0.156

Length

242 amino acids

Sequence
(BLAST)

001: LYAYVLLKIS MASSSDPWMK EYTEASKLVD DISSMIADRS SLPQSGPEIM RHTSAIRRKI TILGTRLDSL VTLLSRIPPK SLTDKEMHKR QDALSNLKSK
101: AKQMGTSFNV SNFANREDLL GQSKKAADDM SRVAGLDNQG IVGLQRQVMR EQDEGLERLE ETVLSTKHIA LAVNEELTLH TRLIDDLEDH VDVTNSRLQR
201: VQKRLAILNK RAKGGCSCMC LMLSVAAIVL LAVIVWLLIK YL

Best Arabidopsis Sequence Match ( AT1G79590.3 )
(BLAST)

001: MGIADFGSQW LILFDSSFCF RRLIFFSTQQ SMASSSDPWM REYNEALKLS EDINGMMSER NASGLTGPDA QRRASAIRRK ITILGTRLDS LQSLLVKVPG
101: KQHVSEKEMN RRKDMVGNLR SKTNQVASAL NMSNFANRDS LFGTDLKPDD AINRVSGMDN QGIVVFQRQV MREQDEGLEK LEETVMSTKH IALAVNEELT
201: LQTRLIDDLD YDVDITDSRL RRVQKSLALM NKSMKSGCSC MSMLLSVLGI VGLALVIWLL VKYL

Arabidopsis Description

SYP52syntaxin of plants 52 [Source:TAIR;Acc:AT1G79590]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.