Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- vacuole 1
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH46259 | Soybean | endoplasmic reticulum, mitochondrion | 82.92 | 87.28 |
| VIT_00s0582g00030.t01 | Wine grape | mitochondrion | 55.83 | 85.9 |
| VIT_00s0227g00170.t01 | Wine grape | mitochondrion | 55.83 | 85.9 |
| VIT_00s2887g00010.t01 | Wine grape | cytosol | 16.67 | 83.33 |
| KRH14303 | Soybean | endoplasmic reticulum | 80.42 | 83.19 |
| KRG98671 | Soybean | endoplasmic reticulum | 80.83 | 77.29 |
| VIT_00s1613g00010.t01 | Wine grape | cytosol | 23.33 | 76.71 |
| Bra008425.1-P | Field mustard | cytosol | 73.33 | 75.21 |
| CDY49743 | Canola | cytosol | 73.33 | 75.21 |
| Bra026727.1-P | Field mustard | cytosol | 72.5 | 74.68 |
| CDY52847 | Canola | cytosol | 72.08 | 74.25 |
| CDY68585 | Canola | cytosol | 72.08 | 73.31 |
| Bra026074.1-P | Field mustard | cytosol | 70.83 | 73.28 |
| CDY35073 | Canola | cytosol | 70.83 | 73.28 |
| CDY33349 | Canola | cytosol | 70.83 | 73.28 |
| CDX81754 | Canola | cytosol | 70.42 | 72.53 |
| KXG27212 | Sorghum | cytosol | 69.17 | 71.86 |
| AT1G16240.1 | Thale cress | cytosol | 68.75 | 71.12 |
| Zm00001d002148_P002 | Maize | cytosol | 68.33 | 71.0 |
| GSMUA_Achr6P34260_001 | Banana | cytosol | 68.75 | 70.82 |
| Zm00001d050146_P001 | Maize | extracellular, mitochondrion | 67.92 | 70.56 |
| Os08t0277900-01 | Rice | plasma membrane | 67.92 | 70.26 |
| TraesCS5A01G062300.1 | Wheat | cytosol | 65.0 | 67.24 |
| TraesCS5B01G069400.1 | Wheat | cytosol | 65.0 | 67.24 |
| Os02t0119400-01 | Rice | plasma membrane | 63.75 | 65.95 |
| TraesCS6A01G059100.1 | Wheat | cytosol | 62.92 | 65.09 |
| TraesCSU01G121500.1 | Wheat | cytosol | 62.92 | 65.09 |
| HORVU5Hr1G016680.2 | Barley | cytosol, vacuole | 65.42 | 64.88 |
| TraesCS6B01G079400.1 | Wheat | cytosol | 62.5 | 64.66 |
| AT1G79590.3 | Thale cress | golgi, plasma membrane | 70.42 | 64.02 |
| Bra035128.1-P | Field mustard | cytosol | 71.25 | 62.41 |
| TraesCS5D01G073500.2 | Wheat | cytosol | 65.0 | 60.47 |
| AT1G16230.1 | Thale cress | cytosol | 41.67 | 51.81 |
| HORVU6Hr1G011180.1 | Barley | mitochondrion | 61.67 | 49.01 |
| AT1G16225.2 | Thale cress | cytosol | 41.25 | 44.39 |
| HORVU4Hr1G023890.1 | Barley | cytosol | 13.75 | 38.37 |
| GSMUA_Achr9P03240_001 | Banana | cytosol | 68.75 | 33.81 |
Protein Annotations
| Gene3D:1.20.5.110 | EntrezGene:100250369 | wikigene:100250369 | MapMan:22.7.4.1 | ProteinID:CCB50700 | ProteinID:CCB50700.1 |
| UniProt:F6HET8 | EMBL:FN595751 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012505 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0031201 | GO:GO:0048278 | InterPro:IPR000727 | EntrezGene:LOC100250369 |
| wikigene:LOC100250369 | PFAM:PF05739 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF207 | SMART:SM00397 |
| SUPFAM:SSF58038 | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI000210A138 | ArrayExpress:VIT_19s0090g01300 | EnsemblPlantsGene:VIT_19s0090g01300 |
| EnsemblPlants:VIT_19s0090g01300.t01 | unigene:Vvi.15472 | RefSeq:XP_002277100 | RefSeq:XP_002277100.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr19:+:7373692..7376661
Molecular Weight (calculated)
26776.8 Da
IEP (calculated)
9.429
GRAVY (calculated)
-0.198
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLIGFRPMA SSDSWMKEYN DAVKLADDIN GMISERISFS APGVDAQRHA SAIRRKITIL GTRLDSLQSL LSKLPGKQPL TEKEMNRRKD MVANLKSKAN
101: QMASTLNMSN FANRDSLLGP EIKPADAMNR TTGLDNYGLV GLQRQIMKEQ DEGLEKLEET VYSTKHIALA VNEELDLHTR LIDNLDQHVD ITDSRLKRVQ
201: KNLAILNKRT KGGCSCLCLL LSVVGIVILI VAIWLLVKYL
101: QMASTLNMSN FANRDSLLGP EIKPADAMNR TTGLDNYGLV GLQRQIMKEQ DEGLEKLEET VYSTKHIALA VNEELDLHTR LIDNLDQHVD ITDSRLKRVQ
201: KNLAILNKRT KGGCSCLCLL LSVVGIVILI VAIWLLVKYL
001: MASSSDSWMR AYNEALKLSE EINGMISERS SSAVTGPDAQ RRASAIRRKI TIFGNKLDSL QSLLAEIHGK PISEKEMNRR KDMVGNLRSK ANQMANALNM
101: SNFANRDSLL GPDIKPDDSM SRVTGMDNQG IVGYQRQVMR EQDEGLEQLE GTVMSTKHIA LAVSEELDLQ TRLIDDLDYH VDVTDSRLRR VQKSLAVMNK
201: NMRSGCSCMS MLLSVLGIVG LAVVIWMLVK YM
101: SNFANRDSLL GPDIKPDDSM SRVTGMDNQG IVGYQRQVMR EQDEGLEQLE GTVMSTKHIA LAVSEELDLQ TRLIDDLDYH VDVTDSRLRR VQKSLAVMNK
201: NMRSGCSCMS MLLSVLGIVG LAVVIWMLVK YM
Arabidopsis Description
SYP51SYP51 [Source:UniProtKB/TrEMBL;Acc:A0A178WJ29]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.