Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G16225.2 | Thale cress | cytosol | 69.95 | 60.54 |
| VIT_00s2887g00010.t01 | Wine grape | cytosol | 12.95 | 52.08 |
| VIT_00s1613g00010.t01 | Wine grape | cytosol | 19.17 | 50.68 |
| AT1G16240.1 | Thale cress | cytosol | 59.59 | 49.57 |
| Bra026074.1-P | Field mustard | cytosol | 59.07 | 49.14 |
| CDY35073 | Canola | cytosol | 59.07 | 49.14 |
| CDY33349 | Canola | cytosol | 58.03 | 48.28 |
| Bra026727.1-P | Field mustard | cytosol | 58.03 | 48.07 |
| CDX81754 | Canola | cytosol | 58.03 | 48.07 |
| CDY52847 | Canola | cytosol | 57.51 | 47.64 |
| PGSC0003DMT400057423 | Potato | cytosol | 56.99 | 47.21 |
| Solyc12g014550.1.1 | Tomato | cytosol | 36.79 | 46.41 |
| Solyc07g065030.2.1 | Tomato | plastid | 49.22 | 45.45 |
| KRH14303 | Soybean | endoplasmic reticulum | 54.4 | 45.26 |
| KRH46259 | Soybean | endoplasmic reticulum, mitochondrion | 52.33 | 44.3 |
| VIT_00s0582g00030.t01 | Wine grape | mitochondrion | 34.72 | 42.95 |
| VIT_00s0227g00170.t01 | Wine grape | mitochondrion | 34.72 | 42.95 |
| VIT_19s0090g01300.t01 | Wine grape | cytosol | 51.81 | 41.67 |
| Zm00001d050146_P001 | Maize | extracellular, mitochondrion | 49.22 | 41.13 |
| KRG98671 | Soybean | endoplasmic reticulum | 53.37 | 41.04 |
| Os08t0277900-01 | Rice | plasma membrane | 49.22 | 40.95 |
| GSMUA_Achr6P34260_001 | Banana | cytosol | 49.22 | 40.77 |
| KXG27212 | Sorghum | cytosol | 48.7 | 40.69 |
| Zm00001d002148_P002 | Maize | cytosol | 48.7 | 40.69 |
| TraesCS5A01G062300.1 | Wheat | cytosol | 48.7 | 40.52 |
| TraesCS5B01G069400.1 | Wheat | cytosol | 48.7 | 40.52 |
| Os02t0119400-01 | Rice | plasma membrane | 48.19 | 40.09 |
| AT1G79590.3 | Thale cress | golgi, plasma membrane | 53.89 | 39.39 |
| HORVU5Hr1G016680.2 | Barley | cytosol, vacuole | 48.7 | 38.84 |
| TraesCS6A01G059100.1 | Wheat | cytosol | 46.63 | 38.79 |
| TraesCS6B01G079400.1 | Wheat | cytosol | 46.63 | 38.79 |
| TraesCSU01G121500.1 | Wheat | cytosol | 45.6 | 37.93 |
| HORVU4Hr1G023890.1 | Barley | cytosol | 16.58 | 37.21 |
| TraesCS5D01G073500.2 | Wheat | cytosol | 48.7 | 36.43 |
| PGSC0003DMT400033466 | Potato | endoplasmic reticulum | 47.15 | 33.96 |
| HORVU6Hr1G011180.1 | Barley | mitochondrion | 47.15 | 30.13 |
| GSMUA_Achr9P03240_001 | Banana | cytosol | 50.26 | 19.88 |
| KRH73827 | Soybean | plastid | 4.15 | 11.59 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.4.1 | EntrezGene:838192 | ProteinID:AEE29422.1 | ArrayExpress:AT1G16230 | EnsemblPlantsGene:AT1G16230 |
| RefSeq:AT1G16230 | TAIR:AT1G16230 | RefSeq:AT1G16230-TAIR-G | EnsemblPlants:AT1G16230.1 | TAIR:AT1G16230.1 | Unigene:At.51633 |
| ncoils:Coil | UniProt:F4I2U8 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012505 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0031201 | GO:GO:0048278 | InterPro:IPR000727 | RefSeq:NP_001319019.1 |
| PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF149 | SUPFAM:SSF58038 | InterPro:T_SNARE_dom | UniParc:UPI000034F392 |
Description
Target SNARE coiled-coil domain protein [Source:UniProtKB/TrEMBL;Acc:F4I2U8]
Coordinates
chr1:-:5553467..5554489
Molecular Weight (calculated)
21872.6 Da
IEP (calculated)
7.238
GRAVY (calculated)
-0.342
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLCDSWIR EQNETLKLSE EIDGMILERS SLAETSSYAL RHASSMRRKI TILATRVQTL KYLLAESQGK SISGKEMSRR KGTFENLRSK ANQMASALDM
101: LKFSNIDILL RPEKDDIMSR VIGLDNQGIV GLHRQVMKEH DEALDMLEET VMRVKHNALV MNEQIGLQTR LIDGLDHHVD VSDSGVRVIH IRA
101: LKFSNIDILL RPEKDDIMSR VIGLDNQGIV GLHRQVMKEH DEALDMLEET VMRVKHNALV MNEQIGLQTR LIDGLDHHVD VSDSGVRVIH IRA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.