Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G062300.1 | Wheat | cytosol | 89.92 | 100.0 |
| TraesCS5B01G069400.1 | Wheat | cytosol | 89.92 | 100.0 |
| HORVU5Hr1G016680.2 | Barley | cytosol, vacuole | 89.92 | 95.87 |
| KXG27212 | Sorghum | cytosol | 81.4 | 90.91 |
| Zm00001d050146_P001 | Maize | extracellular, mitochondrion | 80.62 | 90.04 |
| Zm00001d002148_P002 | Maize | cytosol | 80.23 | 89.61 |
| Os08t0277900-01 | Rice | plasma membrane | 80.23 | 89.22 |
| GSMUA_Achr6P34260_001 | Banana | cytosol | 63.57 | 70.39 |
| KRH46259 | Soybean | endoplasmic reticulum, mitochondrion | 61.24 | 69.3 |
| KRH14303 | Soybean | endoplasmic reticulum | 62.02 | 68.97 |
| VIT_00s0227g00170.t01 | Wine grape | mitochondrion | 41.47 | 68.59 |
| VIT_00s0582g00030.t01 | Wine grape | mitochondrion | 41.47 | 68.59 |
| VIT_00s1613g00010.t01 | Wine grape | cytosol | 18.99 | 67.12 |
| VIT_19s0090g01300.t01 | Wine grape | cytosol | 60.47 | 65.0 |
| CDY33349 | Canola | cytosol | 58.14 | 64.66 |
| VIT_00s2887g00010.t01 | Wine grape | cytosol | 12.02 | 64.58 |
| CDY35073 | Canola | cytosol | 57.75 | 64.22 |
| Bra026074.1-P | Field mustard | cytosol | 57.75 | 64.22 |
| KRG98671 | Soybean | endoplasmic reticulum | 62.4 | 64.14 |
| CDY52847 | Canola | cytosol | 57.75 | 63.95 |
| Bra026727.1-P | Field mustard | cytosol | 57.36 | 63.52 |
| CDY49743 | Canola | cytosol | 57.36 | 63.25 |
| Bra008425.1-P | Field mustard | cytosol | 57.36 | 63.25 |
| CDX81754 | Canola | cytosol | 56.98 | 63.09 |
| AT1G16240.1 | Thale cress | cytosol | 56.2 | 62.5 |
| CDY68585 | Canola | cytosol | 56.2 | 61.44 |
| PGSC0003DMT400072222 | Potato | cytosol | 54.65 | 61.04 |
| Solyc10g081060.1.1 | Tomato | plastid | 52.33 | 60.54 |
| AT1G79590.3 | Thale cress | golgi, plasma membrane | 56.2 | 54.92 |
| KRH73827 | Soybean | plastid | 14.34 | 53.62 |
| Bra035128.1-P | Field mustard | cytosol | 55.43 | 52.19 |
| AT1G16230.1 | Thale cress | cytosol | 36.43 | 48.7 |
| AT1G16225.2 | Thale cress | cytosol | 36.05 | 41.7 |
| GSMUA_Achr9P03240_001 | Banana | cytosol | 65.12 | 34.43 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G073500.2 | EnsemblPlantsGene:TraesCS5D01G073500 | Gene3D:1.20.5.110 | InterPro:IPR000727 | InterPro:T_SNARE_dom | PANTHER:PTHR19957 |
| PANTHER:PTHR19957:SF148 | PFscan:PS50192 | SEG:seg | SUPFAM:SSF58038 | TIGR:cd15841 | TMHMM:TMhelix |
| MapMan:22.7.4.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:72616429..72618647
Molecular Weight (calculated)
28946.5 Da
IEP (calculated)
7.508
GRAVY (calculated)
-0.060
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSDPWMK EYTEASKLVD DISSMIADRS SLPQSGPEIM RHTSAIRRKI TILGTRLDSL VTLLSRIPPK SLTDKEMHKR QDALSNLKSK AKQMGTSFNV
101: SNFANREDLL GQSKKAADDM SRVAGLDNQG IVGLQRQVMR EQDEGLERLE ETVLSTKHIA LAVNEELTLH TRLIDDLEDH VDVTNSRLQV DILLLLFDIE
201: VPFTWMCTDV TLLIQRVQKR LAILNKRAKG GCSCMCLMLS VAAIVLLAVI VWLLIKYL
101: SNFANREDLL GQSKKAADDM SRVAGLDNQG IVGLQRQVMR EQDEGLERLE ETVLSTKHIA LAVNEELTLH TRLIDDLEDH VDVTNSRLQV DILLLLFDIE
201: VPFTWMCTDV TLLIQRVQKR LAILNKRAKG GCSCMCLMLS VAAIVLLAVI VWLLIKYL
001: MASSSDSWMR AYNEALKLSE EINGMISERS SSAVTGPDAQ RRASAIRRKI TIFGNKLDSL QSLLAEIHGK PISEKEMNRR KDMVGNLRSK ANQMANALNM
101: SNFANRDSLL GPDIKPDDSM SRVTGMDNQG IVGYQRQVMR EQDEGLEQLE GTVMSTKHIA LAVSEELDLQ TRLIDDLDYH VDVTDSRLRR VQKSLAVMNK
201: NMRSGCSCMS MLLSVLGIVG LAVVIWMLVK YM
101: SNFANRDSLL GPDIKPDDSM SRVTGMDNQG IVGYQRQVMR EQDEGLEQLE GTVMSTKHIA LAVSEELDLQ TRLIDDLDYH VDVTDSRLRR VQKSLAVMNK
201: NMRSGCSCMS MLLSVLGIVG LAVVIWMLVK YM
Arabidopsis Description
SYP51SYP51 [Source:UniProtKB/TrEMBL;Acc:A0A178WJ29]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.