Factsheet for Bra035128.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
vacuole 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008425.1-P	Field mustard	cytosol	79.2	92.73
CDY49743	Canola	cytosol	79.2	92.73
CDY68585	Canola	cytosol	78.47	91.1
Bra026074.1-P	Field mustard	cytosol	70.07	82.76
Bra026727.1-P	Field mustard	cytosol	70.07	82.4
AT1G79590.3	Thale cress	golgi, plasma membrane	75.55	78.41
KRH46259	Soybean	endoplasmic reticulum, mitochondrion	62.77	75.44
VIT_00s2887g00010.t01	Wine grape	cytosol	12.77	72.92
KRH14303	Soybean	endoplasmic reticulum	61.68	72.84
VIT_19s0090g01300.t01	Wine grape	cytosol	62.41	71.25
Solyc07g065030.2.1	Tomato	plastid	54.01	70.81
VIT_00s0582g00030.t01	Wine grape	mitochondrion	39.42	69.23
VIT_00s0227g00170.t01	Wine grape	mitochondrion	39.42	69.23
PGSC0003DMT400057423	Potato	cytosol	58.76	69.1
KRG98671	Soybean	endoplasmic reticulum	61.31	66.93
VIT_00s1613g00010.t01	Wine grape	cytosol	17.52	65.75
KXG27212	Sorghum	cytosol	53.65	63.64
Zm00001d050146_P001	Maize	extracellular, mitochondrion	53.28	63.2
Zm00001d002148_P002	Maize	cytosol	53.28	63.2
Os08t0277900-01	Rice	plasma membrane	53.28	62.93
TraesCS5A01G062300.1	Wheat	cytosol	52.19	61.64
TraesCS5B01G069400.1	Wheat	cytosol	52.19	61.64
GSMUA_Achr6P34260_001	Banana	cytosol	51.82	60.94
Os02t0119400-01	Rice	plasma membrane	51.46	60.78
Solyc12g014550.1.1	Tomato	cytosol	33.21	59.48
HORVU5Hr1G016680.2	Barley	cytosol, vacuole	52.19	59.09
TraesCS6A01G059100.1	Wheat	cytosol	49.63	58.62
TraesCSU01G121500.1	Wheat	cytosol	49.63	58.62
TraesCS6B01G079400.1	Wheat	cytosol	49.27	58.19
TraesCS5D01G073500.2	Wheat	cytosol	52.19	55.43
PGSC0003DMT400033466	Potato	endoplasmic reticulum	47.81	48.88
KRH73827	Soybean	plastid	11.68	46.38
HORVU6Hr1G011180.1	Barley	mitochondrion	48.54	44.04
HORVU4Hr1G023890.1	Barley	cytosol	11.68	37.21
GSMUA_Achr9P03240_001	Banana	cytosol	55.47	31.15

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.4.1	EnsemblPlantsGene:Bra035128	EnsemblPlants:Bra035128.1	EnsemblPlants:Bra035128.1-P	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0061025	InterPro:IPR000727	UniProt:M4F231	PFAM:PF05739	ScanProsite:PS00914
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF149	SMART:SM00397	SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS
TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0002541DB4	SEG:seg	:	:

Description

AT1G79590 (E=4e-111) SYP52, ATSYP52 | SYP52 (SYNTAXIN OF PLANTS 52); SNAP receptor

Coordinates

chrA07:+:22294175..22295498

Molecular Weight (calculated)

31060.1 Da

IEP (calculated)

9.413

GRAVY (calculated)

-0.304

Length

274 amino acids

Sequence
(BLAST)

001: MASSDAWMRE YNEALKLSED INGMMSERNS SGVTGPDAQR RASAIRRKIT ILGTRLDSLQ SLLVKVPGKQ HVSEKEMNRR KDMVGSLRSK ANKVASALNM
101: SNFANRDSLL GPETKPDDAM NRVSGMDNQG IVGFQRQVMR EQDEGLEKLE ETVMSTKHIA LAVNEELTLQ TRLIEDLDYH VDVTDSRLRR VQKSLAVMNK
201: NMKGGCSCMS MLLSVLGIVG LALVCLSSMR EWLLLYCMLP LFMLCFSLIH VRQKEEYRCV QKKKKNPYNL YFIV

Best Arabidopsis Sequence Match ( AT1G79590.1 )
(BLAST)

001: MASSSDPWMR EYNEALKLSE DINGMMSERN ASGLTGPDAQ RRASAIRRKI TILGTRLDSL QSLLVKVPGK QHVSEKEMNR RKDMVGNLRS KTNQVASALN
101: MSNFANRDSL FGTDLKPDDA INRVSGMDNQ GIVVFQRQVM REQDEGLEKL EETVMSTKHI ALAVNEELTL QTRLIDDLDY DVDITDSRLR RVQKSLALMN
201: KSMKSGCSCM SMLLSVLGIV GLALVIWLLV KYL

Arabidopsis Description

SYP52syntaxin of plants 52 [Source:TAIR;Acc:AT1G79590]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.