Factsheet for Zm00001d050146_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003334_P001
Zm00001d005997_P002
Zm00001d008871_P001
Zm00001d010783_P001
Zm00001d020879_P001
Zm00001d025667_P001
Zm00001d038803_P001
Zm00001d042018_P003
Zm00001d048147_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16240.1	Zm00001d042018_P003	AT1G28490.1	21798944
AT1G16240.1	Zm00001d048147_P002	AT1G28490.1	21798944
AT1G16240.1	Zm00001d008871_P001	AT3G16310.1	21798944
AT1G16240.1	Zm00001d010783_P001	AT3G16310.1	21798944
AT1G16240.1	Zm00001d038803_P001	AT3G16310.1	21798944
AT1G16240.1	Zm00001d003334_P001	AT4G26455.1	21798944
AT1G16240.1	Zm00001d005997_P002	AT4G26455.1	21798944
AT1G16240.1	Zm00001d020879_P001	AT4G26455.1	21798944
AT1G16240.1	Zm00001d025667_P001	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27212	Sorghum	cytosol	98.27	98.27
Zm00001d002148_P002	Maize	cytosol	96.97	96.97
Os08t0277900-01	Rice	plasma membrane	92.21	91.81
TraesCS5B01G069400.1	Wheat	cytosol	90.04	89.66
TraesCS5A01G062300.1	Wheat	cytosol	90.04	89.66
Os02t0119400-01	Rice	plasma membrane	90.04	89.66
HORVU5Hr1G016680.2	Barley	cytosol, vacuole	90.04	85.95
TraesCS6B01G079400.1	Wheat	cytosol	83.12	82.76
TraesCS6A01G059100.1	Wheat	cytosol	83.12	82.76
TraesCSU01G121500.1	Wheat	cytosol	81.82	81.47
TraesCS5D01G073500.2	Wheat	cytosol	90.04	80.62
GSMUA_Achr6P34260_001	Banana	cytosol	74.46	73.82
KRH14303	Soybean	endoplasmic reticulum	71.86	71.55
KRH46259	Soybean	endoplasmic reticulum, mitochondrion	70.56	71.49
VIT_00s0227g00170.t01	Wine grape	mitochondrion	47.19	69.87
VIT_00s0582g00030.t01	Wine grape	mitochondrion	47.19	69.87
VIT_00s1613g00010.t01	Wine grape	cytosol	21.64	68.49
VIT_19s0090g01300.t01	Wine grape	cytosol	70.56	67.92
VIT_00s2887g00010.t01	Wine grape	cytosol	13.85	66.67
KRG98671	Soybean	endoplasmic reticulum	71.86	66.14
Bra026074.1-P	Field mustard	cytosol	66.23	65.95
CDY35073	Canola	cytosol	66.23	65.95
CDY33349	Canola	cytosol	66.23	65.95
Bra026727.1-P	Field mustard	cytosol	65.8	65.24
Bra008425.1-P	Field mustard	cytosol	65.8	64.96
CDY49743	Canola	cytosol	65.8	64.96
CDY52847	Canola	cytosol	65.37	64.81
CDX81754	Canola	cytosol	64.94	64.38
CDY68585	Canola	cytosol	64.5	63.14
AT1G16240.1	Thale cress	cytosol	63.2	62.93
HORVU6Hr1G011180.1	Barley	mitochondrion	82.25	62.91
PGSC0003DMT400072222	Potato	cytosol	62.34	62.34
Solyc10g081060.1.1	Tomato	plastid	59.74	61.88
AT1G79590.3	Thale cress	golgi, plasma membrane	64.5	56.44
HORVU4Hr1G023890.1	Barley	cytosol	20.78	55.81
KRH73827	Soybean	plastid	16.45	55.07
Bra035128.1-P	Field mustard	cytosol	63.2	53.28
AT1G16230.1	Thale cress	cytosol	41.13	49.22
AT1G16225.2	Thale cress	cytosol	41.99	43.5
GSMUA_Achr9P03240_001	Banana	cytosol	74.46	35.25

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100217094	MapMan:22.7.4.1	ProteinID:AQK52024.1	UniProt:B4FLD1	EMBL:BT037919
ncoils:Coil	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000727	PFAM:PF05739
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF148	SMART:SM00397	SUPFAM:SSF58038	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI00017B6AC8	EnsemblPlantsGene:Zm00001d050146	EnsemblPlants:Zm00001d050146_P001	EnsemblPlants:Zm00001d050146_T001	SEG:seg

Description

Syntaxin-51

Coordinates

chr4:+:69100276..69104100

Molecular Weight (calculated)

25922.7 Da

IEP (calculated)

8.854

GRAVY (calculated)

-0.232

Length

231 amino acids

Sequence
(BLAST)

001: MASSSDPWMK EYNEASRLAD DISSMIADRG SLPQSGPEIM RHTSAIRRKI TILGTRLDSL ESLLGRIPPK SITDKEMHKR QDMFSSLKSK AKQMATSFNM
101: SNFANREDLL GQSKKADDMS RVAGLDNQGI VVLQRQIMKE QDEGLEKLEE TVLSTKHIAL AVNEELTLHT RLIDDLEDHV DVTNSRLQRV QKRLAILSKR
201: TKGGCSCMCL LLSVVAIVIL AVIVWLLVKY L

Best Arabidopsis Sequence Match ( AT1G79590.1 )
(BLAST)

001: MASSSDPWMR EYNEALKLSE DINGMMSERN ASGLTGPDAQ RRASAIRRKI TILGTRLDSL QSLLVKVPGK QHVSEKEMNR RKDMVGNLRS KTNQVASALN
101: MSNFANRDSL FGTDLKPDDA INRVSGMDNQ GIVVFQRQVM REQDEGLEKL EETVMSTKHI ALAVNEELTL QTRLIDDLDY DVDITDSRLR RVQKSLALMN
201: KSMKSGCSCM SMLLSVLGIV GLALVIWLLV KYL

Arabidopsis Description

SYP52syntaxin of plants 52 [Source:TAIR;Acc:AT1G79590]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.