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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • golgi 2
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, golgi, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:golgi
PProwler:plastid
TargetP:plastid
WoLF PSORT:golgi
YLoc:cytosol
plastid: 22908117
unclear: 26455813
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400072222 Potato cytosol 96.86 93.51
Solyc07g065030.2.1 Tomato plastid 65.02 69.38
KXG27212 Sorghum cytosol 63.23 61.04
Zm00001d002148_P002 Maize cytosol 62.33 60.17
Zm00001d050146_P001 Maize extracellular, mitochondrion 61.88 59.74
Os08t0277900-01 Rice plasma membrane 61.44 59.05
GSMUA_Achr6P34260_001 Banana cytosol 61.44 58.8
TraesCS5A01G062300.1 Wheat cytosol 60.09 57.76
TraesCS5B01G069400.1 Wheat cytosol 60.09 57.76
Os02t0119400-01 Rice plasma membrane 59.64 57.33
HORVU5Hr1G016680.2 Barley cytosol, vacuole 60.09 55.37
TraesCS6A01G059100.1 Wheat cytosol 56.95 54.74
TraesCS6B01G079400.1 Wheat cytosol 56.5 54.31
Solyc12g014550.1.1 Tomato cytosol 37.22 54.25
TraesCSU01G121500.1 Wheat cytosol 55.61 53.45
TraesCS5D01G073500.2 Wheat cytosol 60.54 52.33
HORVU6Hr1G011180.1 Barley mitochondrion 57.85 42.72
HORVU4Hr1G023890.1 Barley cytosol 15.25 39.53
GSMUA_Achr9P03240_001 Banana cytosol 64.13 29.3
Protein Annotations
Gene3D:1.20.5.110MapMan:22.7.4.1ncoils:CoilGO:GO:0000149GO:GO:0003674GO:GO:0005484
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0006810GO:GO:0006886GO:GO:0006906GO:GO:0008150GO:GO:0009987GO:GO:0012505
GO:GO:0016020GO:GO:0016021GO:GO:0016043GO:GO:0031201GO:GO:0048278InterPro:IPR000727
UniProt:K4D2Z3PFAM:PF05739PFscan:PS50192PANTHER:PTHR19957PANTHER:PTHR19957:SF207SMART:SM00397
SUPFAM:SSF58038EnsemblPlantsGene:Solyc10g081060.1EnsemblPlants:Solyc10g081060.1.1TMHMM:TMhelixInterPro:T_SNARE_domUniParc:UPI0002769784
SEG:seg:::::
Description
No Description!
Coordinates
chr10:+:62241829..62243166
Molecular Weight (calculated)
25264.8 Da
IEP (calculated)
9.996
GRAVY (calculated)
-0.310
Length
223 amino acids
Sequence
(BLAST)
001: MREFNEASKL ADEVSSMISA KSSLPSSGPE SQRHLSAARR KITILRTRLD TLQSLLQTLP SKQPLSKKEM KRRHDMLDNM ITKANQMAST LNMNNLANRD
101: SLLGPETKRP DVISRATGLD NQDLVGFQRQ VIKEQDEDLD KLEETVVSTK HVALAINEEL NLHTALLDNL DYHVDTTNSR LQRVQRKLAF LNKRTKGGCT
201: WLCLLIIFIV ILAVAIFLLV KYL
Best Arabidopsis Sequence Match ( AT1G16240.2 )
(BLAST)
001: MASSSDSWMR AYNEALKLSE EINGMISERS SSAVTGPDAQ RRASAIRRKI TIFGNKLDSL QSLLAEIHGK PISEKEMNRR KDMVGNLRSK ANQMANALNM
101: SNFANRDSLL GPDIKPDDSM SRVTGMDNQG IVGYQRQVMR EQDEGLEQLE GTVMSTKHIA LAVSEELDLQ TRLIDDLDYH VDVTDSRLRR VQKSLAVMNK
201: NMRSGCSCMS MLLSVLGIVG LAVVIWMLVK YM
Arabidopsis Description
SYP51SYP51 [Source:UniProtKB/TrEMBL;Acc:A0A178WJ29]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.