Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- golgi 2
- plastid 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
22908117
unclear: 26455813 |
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400072222 | Potato | cytosol | 96.86 | 93.51 |
Solyc07g065030.2.1 | Tomato | plastid | 65.02 | 69.38 |
KXG27212 | Sorghum | cytosol | 63.23 | 61.04 |
Zm00001d002148_P002 | Maize | cytosol | 62.33 | 60.17 |
Zm00001d050146_P001 | Maize | extracellular, mitochondrion | 61.88 | 59.74 |
Os08t0277900-01 | Rice | plasma membrane | 61.44 | 59.05 |
GSMUA_Achr6P34260_001 | Banana | cytosol | 61.44 | 58.8 |
TraesCS5A01G062300.1 | Wheat | cytosol | 60.09 | 57.76 |
TraesCS5B01G069400.1 | Wheat | cytosol | 60.09 | 57.76 |
Os02t0119400-01 | Rice | plasma membrane | 59.64 | 57.33 |
HORVU5Hr1G016680.2 | Barley | cytosol, vacuole | 60.09 | 55.37 |
TraesCS6A01G059100.1 | Wheat | cytosol | 56.95 | 54.74 |
TraesCS6B01G079400.1 | Wheat | cytosol | 56.5 | 54.31 |
Solyc12g014550.1.1 | Tomato | cytosol | 37.22 | 54.25 |
TraesCSU01G121500.1 | Wheat | cytosol | 55.61 | 53.45 |
TraesCS5D01G073500.2 | Wheat | cytosol | 60.54 | 52.33 |
HORVU6Hr1G011180.1 | Barley | mitochondrion | 57.85 | 42.72 |
HORVU4Hr1G023890.1 | Barley | cytosol | 15.25 | 39.53 |
GSMUA_Achr9P03240_001 | Banana | cytosol | 64.13 | 29.3 |
Protein Annotations
Gene3D:1.20.5.110 | MapMan:22.7.4.1 | ncoils:Coil | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012505 |
GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0031201 | GO:GO:0048278 | InterPro:IPR000727 |
UniProt:K4D2Z3 | PFAM:PF05739 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF207 | SMART:SM00397 |
SUPFAM:SSF58038 | EnsemblPlantsGene:Solyc10g081060.1 | EnsemblPlants:Solyc10g081060.1.1 | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0002769784 |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr10:+:62241829..62243166
Molecular Weight (calculated)
25264.8 Da
IEP (calculated)
9.996
GRAVY (calculated)
-0.310
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MREFNEASKL ADEVSSMISA KSSLPSSGPE SQRHLSAARR KITILRTRLD TLQSLLQTLP SKQPLSKKEM KRRHDMLDNM ITKANQMAST LNMNNLANRD
101: SLLGPETKRP DVISRATGLD NQDLVGFQRQ VIKEQDEDLD KLEETVVSTK HVALAINEEL NLHTALLDNL DYHVDTTNSR LQRVQRKLAF LNKRTKGGCT
201: WLCLLIIFIV ILAVAIFLLV KYL
101: SLLGPETKRP DVISRATGLD NQDLVGFQRQ VIKEQDEDLD KLEETVVSTK HVALAINEEL NLHTALLDNL DYHVDTTNSR LQRVQRKLAF LNKRTKGGCT
201: WLCLLIIFIV ILAVAIFLLV KYL
001: MASSSDSWMR AYNEALKLSE EINGMISERS SSAVTGPDAQ RRASAIRRKI TIFGNKLDSL QSLLAEIHGK PISEKEMNRR KDMVGNLRSK ANQMANALNM
101: SNFANRDSLL GPDIKPDDSM SRVTGMDNQG IVGYQRQVMR EQDEGLEQLE GTVMSTKHIA LAVSEELDLQ TRLIDDLDYH VDVTDSRLRR VQKSLAVMNK
201: NMRSGCSCMS MLLSVLGIVG LAVVIWMLVK YM
101: SNFANRDSLL GPDIKPDDSM SRVTGMDNQG IVGYQRQVMR EQDEGLEQLE GTVMSTKHIA LAVSEELDLQ TRLIDDLDYH VDVTDSRLRR VQKSLAVMNK
201: NMRSGCSCMS MLLSVLGIVG LAVVIWMLVK YM
Arabidopsis Description
SYP51SYP51 [Source:UniProtKB/TrEMBL;Acc:A0A178WJ29]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.