Factsheet for GSMUA_Achr6P34260_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr3P04120_001
GSMUA_Achr4P01630_001
GSMUA_Achr4P08270_001
GSMUA_Achr4P10230_001
GSMUA_Achr4P15460_001
GSMUA_Achr6P14800_001
GSMUA_Achr6P18060_001
GSMUA_Achr6P25690_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16240.1	GSMUA_Achr10P...	AT1G28490.1	21798944
AT1G16240.1	GSMUA_Achr10P...	AT1G28490.1	21798944
AT1G16240.1	GSMUA_Achr6P18060_001	AT1G28490.1	21798944
AT1G16240.1	GSMUA_Achr6P25690_001	AT1G28490.1	21798944
AT1G16240.1	GSMUA_Achr4P08270_001	AT3G16310.1	21798944
AT1G16240.1	GSMUA_Achr4P15460_001	AT3G16310.1	21798944
AT1G16240.1	GSMUA_Achr6P14800_001	AT3G16310.1	21798944
AT1G16240.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944
AT1G16240.1	GSMUA_Achr10P...	AT4G26455.1	21798944
AT1G16240.1	GSMUA_Achr3P04120_001	AT4G26455.1	21798944
AT1G16240.1	GSMUA_Achr4P01630_001	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27212	Sorghum	cytosol	74.68	75.32
Os08t0277900-01	Rice	plasma membrane	74.25	74.57
Zm00001d050146_P001	Maize	extracellular, mitochondrion	73.82	74.46
VIT_00s0582g00030.t01	Wine grape	mitochondrion	49.36	73.72
VIT_00s0227g00170.t01	Wine grape	mitochondrion	49.36	73.72
Zm00001d002148_P002	Maize	cytosol	72.96	73.59
Os02t0119400-01	Rice	plasma membrane	72.1	72.41
TraesCS5B01G069400.1	Wheat	cytosol	70.39	70.69
TraesCS5A01G062300.1	Wheat	cytosol	70.39	70.69
KRH14303	Soybean	endoplasmic reticulum	70.39	70.69
TraesCS6A01G059100.1	Wheat	cytosol	69.53	69.83
KRH46259	Soybean	endoplasmic reticulum, mitochondrion	68.24	69.74
TraesCS6B01G079400.1	Wheat	cytosol	69.1	69.4
TraesCSU01G121500.1	Wheat	cytosol	68.67	68.97
VIT_19s0090g01300.t01	Wine grape	cytosol	70.82	68.75
VIT_00s2887g00010.t01	Wine grape	cytosol	14.16	68.75
HORVU5Hr1G016680.2	Barley	cytosol, vacuole	70.39	67.77
CDY33349	Canola	cytosol	64.38	64.66
Bra026074.1-P	Field mustard	cytosol	63.95	64.22
CDY35073	Canola	cytosol	63.95	64.22
KRG98671	Soybean	endoplasmic reticulum	69.1	64.14
CDY49743	Canola	cytosol	63.95	63.68
Bra008425.1-P	Field mustard	cytosol	63.95	63.68
TraesCS5D01G073500.2	Wheat	cytosol	70.39	63.57
VIT_00s1613g00010.t01	Wine grape	cytosol	19.74	63.01
CDY52847	Canola	cytosol	62.66	62.66
CDX81754	Canola	cytosol	62.23	62.23
Bra026727.1-P	Field mustard	cytosol	62.23	62.23
CDY68585	Canola	cytosol	62.66	61.86
Solyc10g081060.1.1	Tomato	plastid	58.8	61.44
AT1G16240.1	Thale cress	cytosol	60.52	60.78
PGSC0003DMT400072222	Potato	cytosol	59.66	60.17
AT1G79590.3	Thale cress	golgi, plasma membrane	63.09	55.68
HORVU6Hr1G011180.1	Barley	mitochondrion	68.24	52.65
Bra035128.1-P	Field mustard	cytosol	60.94	51.82
KRH73827	Soybean	plastid	15.02	50.72
AT1G16230.1	Thale cress	cytosol	40.77	49.22
HORVU4Hr1G023890.1	Barley	cytosol	16.31	44.19
AT1G16225.2	Thale cress	cytosol	40.34	42.15
GSMUA_Achr9P03240_001	Banana	cytosol	87.98	42.01

Protein Annotations

EnsemblPlants:GSMUA_Achr6P34260_001	EnsemblPlants:GSMUA_Achr6T34260_001	EnsemblPlantsGene:GSMUA_Achr6G34260_001	Gene3D:1.20.5.110	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000727	InterPro:T_SNARE_dom	ncoils:Coil	PANTHER:PTHR19957	PANTHER:PTHR19957:SF148
PFAM:PF05739	PFscan:PS50192	SEG:seg	SMART:SM00397	SUPFAM:SSF58038	TMHMM:TMhelix
UniParc:UPI000295D53F	UniProt:M0TCL9	MapMan:22.7.4.1	:	:	:

Description

Syntaxin-52 [Source:GMGC_GENE;Acc:GSMUA_Achr6G34260_001]

Coordinates

chr6:+:32983246..32988722

Molecular Weight (calculated)

26230.0 Da

IEP (calculated)

8.082

GRAVY (calculated)

-0.258

Length

233 amino acids

Sequence
(BLAST)

001: MATSLDQWTR ELNEASKLAE DISVMISERG SLPPSGPDTQ RHLTAMRRKI TILRTRLESL ESILSKLPSL QPIKDKELNK RQEMLANLKS KADQMASELN
101: MSNFSNRKDL FGDGKKSADV VSRTAGLDNQ GIVGLQRQIM REQDEGLEKL EETVLSTKHI ALAVNEELDL HTRLIDDLDE HVDITDTRLQ RVQKRLAILS
201: KRTKGGCSCM CLLLSVVAIV ILIVIAWVLI KYL

Best Arabidopsis Sequence Match ( AT1G79590.3 )
(BLAST)

001: MGIADFGSQW LILFDSSFCF RRLIFFSTQQ SMASSSDPWM REYNEALKLS EDINGMMSER NASGLTGPDA QRRASAIRRK ITILGTRLDS LQSLLVKVPG
101: KQHVSEKEMN RRKDMVGNLR SKTNQVASAL NMSNFANRDS LFGTDLKPDD AINRVSGMDN QGIVVFQRQV MREQDEGLEK LEETVMSTKH IALAVNEELT
201: LQTRLIDDLD YDVDITDSRL RRVQKSLALM NKSMKSGCSC MSMLLSVLGI VGLALVIWLL VKYL

Arabidopsis Description

SYP52syntaxin of plants 52 [Source:TAIR;Acc:AT1G79590]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.