Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- golgi 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P18060_001 | Banana | cytosol | 80.95 | 54.62 |
| Solyc12g089150.1.1 | Tomato | cytosol | 39.88 | 51.94 |
| GSMUA_Achr6P25690_001 | Banana | cytosol, golgi, nucleus | 64.29 | 42.35 |
| KRH14393 | Soybean | cytosol, golgi, nucleus | 60.71 | 42.15 |
| Os11t0168100-01 | Rice | plasma membrane | 58.93 | 42.13 |
| KRH73753 | Soybean | cytosol, golgi, nucleus | 60.12 | 41.74 |
| TraesCS4A01G208100.1 | Wheat | cytosol, golgi, nucleus | 58.33 | 41.7 |
| TraesCS4B01G111700.1 | Wheat | cytosol, golgi, nucleus | 58.33 | 41.7 |
| KRG98757 | Soybean | cytosol, golgi, nucleus | 60.71 | 41.46 |
| KRH46186 | Soybean | cytosol, golgi, nucleus | 60.71 | 41.46 |
| EES08039 | Sorghum | cytosol, golgi, nucleus | 55.36 | 39.57 |
| PGSC0003DMT400039964 | Potato | nucleus | 57.14 | 38.87 |
| CDY34096 | Canola | cytosol, golgi, nucleus | 55.36 | 37.96 |
| Bra032912.1-P | Field mustard | cytosol, golgi, nucleus | 55.36 | 37.96 |
| EES04275 | Sorghum | cytosol | 52.38 | 37.93 |
| HORVU3Hr1G111910.1 | Barley | cytosol | 52.98 | 37.87 |
| Os01t0963300-01 | Rice | plasma membrane | 52.38 | 37.61 |
| CDY15661 | Canola | cytosol, golgi, nucleus | 54.76 | 37.55 |
| TraesCS3D01G516200.1 | Wheat | cytosol | 51.79 | 37.18 |
| TraesCS3B01G577200.1 | Wheat | cytosol | 51.79 | 37.18 |
| TraesCS3A01G508800.1 | Wheat | cytosol | 51.79 | 37.18 |
| AT1G28490.1 | Thale cress | nucleus | 54.17 | 37.14 |
| CDY30816 | Canola | nucleus | 54.17 | 37.14 |
| CDX94628 | Canola | cytosol, golgi, nucleus | 54.17 | 37.14 |
| HORVU4Hr1G019940.1 | Barley | cytosol | 57.14 | 36.92 |
| TraesCS3A01G508700.1 | Wheat | cytosol, golgi, peroxisome | 48.81 | 36.77 |
| Bra010866.1-P | Field mustard | cytosol | 53.57 | 36.73 |
| VIT_05s0094g00860.t01 | Wine grape | endoplasmic reticulum, vacuole | 61.31 | 35.4 |
| KRH33360 | Soybean | nucleus | 26.79 | 33.58 |
| Zm00001d048147_P002 | Maize | cytosol | 50.0 | 33.33 |
| Zm00001d042018_P003 | Maize | cytosol, golgi, nucleus | 51.19 | 32.33 |
| CDX90156 | Canola | cytosol, nucleus, plasma membrane | 53.57 | 20.41 |
| CDY35752 | Canola | nucleus | 50.6 | 19.91 |
| KRH25827 | Soybean | nucleus | 17.86 | 14.85 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.4.2 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 | EnsemblPlantsGene:GSMUA_Achr10G09550_001 |
| EnsemblPlants:GSMUA_Achr10P09550_001 | EnsemblPlants:GSMUA_Achr10T09550_001 | InterPro:IPR000727 | UniProt:M0RGT1 | ScanProsite:PS00914 | PFscan:PS50192 |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF150 | SMART:SM00397 | InterPro:SNARE | SUPFAM:SSF47661 | SUPFAM:SSF58038 |
| InterPro:Syntaxin/epimorphin_CS | InterPro:T_SNARE_dom | UniParc:UPI000295235D | : | : | : |
Description
Syntaxin-61 [Source:GMGC_GENE;Acc:GSMUA_Achr10G09550_001]
Coordinates
chr10:+:19346205..19348898
Molecular Weight (calculated)
19011.5 Da
IEP (calculated)
7.682
GRAVY (calculated)
-0.751
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIAVAVRDP AWYGLDEVEL EKRRRWTSTA RYQVGNIRKT VEAGKEKQNS FSLGTNGVRK ELMGLPNDHA SQAGRSNNYI NQDNEDFISS ESDQQLLLIK
101: KQDEELDELS ASVRRIGDVG LTIHDELVGQ GKLLDEFGME METTSNRLDF VQKKVAKVMK RRAPRAKS
101: KQDEELDELS ASVRRIGDVG LTIHDELVGQ GKLLDEFGME METTSNRLDF VQKKVAKVMK RRAPRAKS
001: MAIEAVFTDR KVDELEKAIT VAAKDPSWYG IDEAELEKRR RWTSNARTQV RNVKSGVLAG KVSSGAGHAS EVRRELMRMP NSGEASRYDQ YGGRDDDGFV
101: QSESDRQMLL IKQQDEELDE LSKSVQRIGG VGLTIHDELV AQERIIDELD TEMDSTKNRL EFVQKKVGMV MKKAGAKGQM MMICFLLVLF IILFVLVFLT
101: QSESDRQMLL IKQQDEELDE LSKSVQRIGG VGLTIHDELV AQERIIDELD TEMDSTKNRL EFVQKKVGMV MKKAGAKGQM MMICFLLVLF IILFVLVFLT
Arabidopsis Description
SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.