Factsheet for Zm00001d042018_P003

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003334_P001
Zm00001d005997_P002
Zm00001d008871_P001
Zm00001d010783_P001
Zm00001d016570_P001
Zm00001d020879_P001
Zm00001d025667_P001
Zm00001d038803_P001
Zm00001d050563_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28490.1	Zm00001d016570_P001	AT1G27300.1	21798944
AT1G28490.1	Zm00001d050563_P001	AT1G27300.1	21798944
AT1G28490.1	Zm00001d008871_P001	AT3G16310.1	21798944
AT1G28490.1	Zm00001d010783_P001	AT3G16310.1	21798944
AT1G28490.1	Zm00001d038803_P001	AT3G16310.1	21798944
AT1G28490.1	Zm00001d003334_P001	AT4G26455.1	21798944
AT1G28490.1	Zm00001d005997_P002	AT4G26455.1	21798944
AT1G28490.1	Zm00001d020879_P001	AT4G26455.1	21798944
AT1G28490.1	Zm00001d025667_P001	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04275	Sorghum	cytosol	84.59	96.98
Zm00001d048147_P002	Maize	cytosol	86.84	91.67
TraesCS3D01G516200.1	Wheat	cytosol	77.44	88.03
TraesCS3A01G508800.1	Wheat	cytosol	77.07	87.61
TraesCS3B01G577200.1	Wheat	cytosol	76.69	87.18
Os01t0963300-01	Rice	plasma membrane	76.69	87.18
HORVU3Hr1G111910.1	Barley	cytosol	76.69	86.81
TraesCS3A01G508700.1	Wheat	cytosol, golgi, peroxisome	68.42	81.61
GSMUA_Achr6P18060_001	Banana	cytosol	62.78	67.07
Solyc12g089150.1.1	Tomato	cytosol	31.95	65.89
PGSC0003DMT400039964	Potato	nucleus	60.53	65.18
KRH14393	Soybean	cytosol, golgi, nucleus	57.89	63.64
KRH46186	Soybean	cytosol, golgi, nucleus	57.52	62.2
KRH73753	Soybean	cytosol, golgi, nucleus	56.39	61.98
GSMUA_Achr6P25690_001	Banana	cytosol, golgi, nucleus	59.4	61.96
Bra032912.1-P	Field mustard	cytosol, golgi, nucleus	56.77	61.63
CDY34096	Canola	cytosol, golgi, nucleus	56.77	61.63
KRG98757	Soybean	cytosol, golgi, nucleus	56.77	61.38
CDY30816	Canola	nucleus	56.39	61.22
CDY15661	Canola	cytosol, golgi, nucleus	56.02	60.82
CDX94628	Canola	cytosol, golgi, nucleus	56.02	60.82
AT1G28490.1	Thale cress	nucleus	55.64	60.41
Bra010866.1-P	Field mustard	cytosol	55.64	60.41
VIT_05s0094g00860.t01	Wine grape	endoplasmic reticulum, vacuole	62.41	57.04
KRH33360	Soybean	nucleus	26.32	52.24
GSMUA_Achr10P...	Banana	cytosol	32.33	51.19
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	9.4	48.08
CDX90156	Canola	cytosol, nucleus, plasma membrane	54.51	32.88
CDY35752	Canola	nucleus	50.0	31.15
KRH25827	Soybean	nucleus	21.43	28.22

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.90	EntrezGene:100273880	MapMan:22.7.4.2	UniProt:A0A1D6N0J7	ncoils:Coil
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192
GO:GO:0048193	InterPro:IPR000727	ProteinID:ONM34313.1	PFAM:PF05739	PFAM:PF09177	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF150	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038
InterPro:Syntaxin-6_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0008443BBA	EnsemblPlantsGene:Zm00001d042018	EnsemblPlants:Zm00001d042018_P003
EnsemblPlants:Zm00001d042018_T003	SEG:seg	:	:	:	:

Description

Syntaxin-61

Coordinates

chr3:+:147533330..147549725

Molecular Weight (calculated)

30654.5 Da

IEP (calculated)

5.067

GRAVY (calculated)

-0.322

Length

266 amino acids

Sequence
(BLAST)

001: MSSAQDPFYI VREEIQESID KLQSNFHRWE QTASNTGEYV HLTKELLTSC ESIEWQVDEL EKTISVASRD PSYYGLDEVE LSRRRNWTGS AHKQVCIRSY
101: CSNSSVICQC TLIFYMDPHL HFMHEHIQVG TVKRAIEKGK SNVATSKYQD TSRTNHYSAQ DNDDFISSES DRQLLLMRQQ DEELDELSES VQRIGGVGLT
201: IHEELSGQER ILNDLSLEME TTSNRLDFVQ KRVAMVMKKA GIKGQIMLIV FLVVLFIILF VLVFLT

Best Arabidopsis Sequence Match ( AT1G28490.1 )
(BLAST)

001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT

Arabidopsis Description

SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.