Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- vacuole 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400039964 | Potato | nucleus | 98.45 | 51.42 |
| GSMUA_Achr10P... | Banana | cytosol | 51.94 | 39.88 |
| KRH46186 | Soybean | cytosol, golgi, nucleus | 73.64 | 38.62 |
| KRG98757 | Soybean | cytosol, golgi, nucleus | 73.64 | 38.62 |
| KRH14393 | Soybean | cytosol, golgi, nucleus | 71.32 | 38.02 |
| AT1G28490.1 | Thale cress | nucleus | 72.09 | 37.96 |
| CDY15661 | Canola | cytosol, golgi, nucleus | 72.09 | 37.96 |
| KRH73753 | Soybean | cytosol, golgi, nucleus | 70.54 | 37.6 |
| Bra010866.1-P | Field mustard | cytosol | 71.32 | 37.55 |
| Bra032912.1-P | Field mustard | cytosol, golgi, nucleus | 71.32 | 37.55 |
| CDX94628 | Canola | cytosol, golgi, nucleus | 71.32 | 37.55 |
| CDY30816 | Canola | nucleus | 71.32 | 37.55 |
| CDY34096 | Canola | cytosol, golgi, nucleus | 71.32 | 37.55 |
| Os01t0963300-01 | Rice | plasma membrane | 65.89 | 36.32 |
| EES04275 | Sorghum | cytosol | 65.12 | 36.21 |
| GSMUA_Achr6P18060_001 | Banana | cytosol | 68.99 | 35.74 |
| TraesCS3A01G508700.1 | Wheat | cytosol, golgi, peroxisome | 61.24 | 35.43 |
| HORVU3Hr1G111910.1 | Barley | cytosol | 64.34 | 35.32 |
| TraesCS3D01G516200.1 | Wheat | cytosol | 63.57 | 35.04 |
| TraesCS3B01G577200.1 | Wheat | cytosol | 63.57 | 35.04 |
| TraesCS3A01G508800.1 | Wheat | cytosol | 63.57 | 35.04 |
| GSMUA_Achr6P25690_001 | Banana | cytosol, golgi, nucleus | 68.99 | 34.9 |
| VIT_05s0094g00860.t01 | Wine grape | endoplasmic reticulum, vacuole | 75.97 | 33.68 |
| TraesCS4A01G208100.1 | Wheat | cytosol, golgi, nucleus | 61.24 | 33.62 |
| Os11t0168100-01 | Rice | plasma membrane | 61.24 | 33.62 |
| Zm00001d048147_P002 | Maize | cytosol | 65.12 | 33.33 |
| TraesCS4B01G111700.1 | Wheat | cytosol, golgi, nucleus | 60.47 | 33.19 |
| EES08039 | Sorghum | cytosol, golgi, nucleus | 59.69 | 32.77 |
| Zm00001d042018_P003 | Maize | cytosol, golgi, nucleus | 65.89 | 31.95 |
| HORVU4Hr1G019940.1 | Barley | cytosol | 53.49 | 26.54 |
| KRH25827 | Soybean | nucleus | 33.33 | 21.29 |
| CDX90156 | Canola | cytosol, nucleus, plasma membrane | 68.99 | 20.18 |
| KRH33360 | Soybean | nucleus | 20.16 | 19.4 |
| CDY35752 | Canola | nucleus | 61.24 | 18.5 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.4.2 | ncoils:Coil | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0005802 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006906 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0012505 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0031201 |
| GO:GO:0048278 | InterPro:IPR000727 | UniProt:K4DGY6 | PFAM:PF05739 | PFscan:PS50192 | PANTHER:PTHR19957 |
| PANTHER:PTHR19957:SF150 | SUPFAM:SSF58038 | EnsemblPlantsGene:Solyc12g089150.1 | EnsemblPlants:Solyc12g089150.1.1 | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| UniParc:UPI00027695D3 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:64261427..64262547
Molecular Weight (calculated)
14925.2 Da
IEP (calculated)
4.567
GRAVY (calculated)
-0.091
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRELLRLPD SEQKERSNAY NARDNDDFIS SESDRQLLLM RQQDEELDEL SASVVRIGDV GLTIHDELLA HEKILSELDT EMDSTSNRLD FIQKKIGMVM
101: KKASVKGQMM MICFLIVLFI VLFVLVFLT
101: KKASVKGQMM MICFLIVLFI VLFVLVFLT
001: MWRRSLLLLV EALSGRKVDE LEKAITVAAK DPSWYGIDEA ELEKRRRWTS NARTQVRNVK SGVLAGKVSS GAGHASEVRR ELMRMPNSGE ASRYDQYGGR
101: DDDGFVQSES DRQMLLIKQQ DEELDELSKS VQRIGGVGLT IHDELVAQER IIDELDTEMD STKNRLEFVQ KKVGMVMKKA GAKGQMMMIC FLLVLFIILF
201: VLVFLT
101: DDDGFVQSES DRQMLLIKQQ DEELDELSKS VQRIGGVGLT IHDELVAQER IIDELDTEMD STKNRLEFVQ KKVGMVMKKA GAKGQMMMIC FLLVLFIILF
201: VLVFLT
Arabidopsis Description
SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.