Factsheet for Os01t0963300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 2
vacuole 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0200500-01
Os02t0509600-01
Os04t0471300-01
Os05t0520100-00
Os08t0497900-01
Os09t0481300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28490.1	Os02t0509600-01	AT1G27300.1	21798944
AT1G28490.1	Os01t0200500-01	AT3G16310.1	21798944
AT1G28490.1	Os05t0520100-00	AT3G16310.1	21798944
AT1G28490.1	Os04t0471300-01	AT4G26455.1	21798944
AT1G28490.1	Os08t0497900-01	AT4G26455.1	21798944
AT1G28490.1	Os09t0481300-01	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04275	Sorghum	cytosol	88.46	89.22
TraesCS3D01G516200.1	Wheat	cytosol	88.03	88.03
TraesCS3A01G508800.1	Wheat	cytosol	87.61	87.61
HORVU3Hr1G111910.1	Barley	cytosol	87.61	87.23
TraesCS3B01G577200.1	Wheat	cytosol	87.18	87.18
TraesCS3A01G508700.1	Wheat	cytosol, golgi, peroxisome	77.78	81.61
Zm00001d048147_P002	Maize	cytosol	85.9	79.76
Zm00001d042018_P003	Maize	cytosol, golgi, nucleus	87.18	76.69
Os11t0168100-01	Rice	plasma membrane	71.37	71.06
GSMUA_Achr6P18060_001	Banana	cytosol	71.37	67.07
Solyc12g089150.1.1	Tomato	cytosol	36.32	65.89
KRH14393	Soybean	cytosol, golgi, nucleus	64.53	62.4
PGSC0003DMT400039964	Potato	nucleus	65.81	62.35
KRH46186	Soybean	cytosol, golgi, nucleus	64.96	61.79
CDY34096	Canola	cytosol, golgi, nucleus	64.53	61.63
Bra032912.1-P	Field mustard	cytosol, golgi, nucleus	64.53	61.63
CDY30816	Canola	nucleus	64.1	61.22
GSMUA_Achr6P25690_001	Banana	cytosol, golgi, nucleus	66.67	61.18
KRH73753	Soybean	cytosol, golgi, nucleus	63.25	61.16
KRG98757	Soybean	cytosol, golgi, nucleus	64.1	60.98
AT1G28490.1	Thale cress	nucleus	63.68	60.82
CDY15661	Canola	cytosol, golgi, nucleus	63.68	60.82
CDX94628	Canola	cytosol, golgi, nucleus	63.68	60.82
Bra010866.1-P	Field mustard	cytosol	63.68	60.82
VIT_05s0094g00860.t01	Wine grape	endoplasmic reticulum, vacuole	70.09	56.36
GSMUA_Achr10P...	Banana	cytosol	37.61	52.38
KRH33360	Soybean	nucleus	29.49	51.49
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	10.26	46.15
CDX90156	Canola	cytosol, nucleus, plasma membrane	62.39	33.11
CDY35752	Canola	nucleus	57.27	31.38
KRH25827	Soybean	nucleus	23.5	27.23

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.90	MapMan:22.7.4.2	EntrezGene:4324558	EMBL:AK067544	ProteinID:BAD87234.1
ProteinID:BAF07399.1	ProteinID:BAS76355.1	ncoils:Coil	ProteinID:EEE56055.1	GO:GO:0000149	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987
GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201
GO:GO:0048193	GO:GO:0048278	InterPro:IPR000727	EnsemblPlantsGene:Os01g0963300	EnsemblPlants:Os01t0963300-01	PFAM:PF05739
PFAM:PF09177	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF150	UniProt:Q5JMS0	SMART:SM00397
InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038	InterPro:Syntaxin-6_N	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI00004C2900	RefSeq:XP_015625156.1	SEG:seg	:	:	:

Description

Similar to Syntaxin 61 (AtSYP61) (Osmotic stess-sensitive mutant 1). (Os01t0963300-01)

Coordinates

chr1:-:42447928..42450912

Molecular Weight (calculated)

26834.9 Da

IEP (calculated)

4.927

GRAVY (calculated)

-0.383

Length

234 amino acids

Sequence
(BLAST)

001: MSSAQDPFYI VREEIQDSID KLQTTFHRWE KTPSNTGEHV HLTKELHTSC ESIEWQVDEL EKTILVASRD PAYYGLDEVE LSRRRNWIGS ARNQVAAVRR
101: SVEKGKSNST FSAHQDMGTS RSNHYTAQDN DDFIASESDR QLLLMRQQDE ELDELSESVQ RIGGVGLTIH EELSGQERIL NDLSLEMETT SNRLDFVQKR
201: VAMVMKKAGI KGQIMLILFL VVLFIILFVL VFLT

Best Arabidopsis Sequence Match ( AT1G28490.1 )
(BLAST)

001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT

Arabidopsis Description

SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.