CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
vacuole 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH09922
KRH22653
KRH23409
KRH26664
KRH31520
KRH56393
KRH62532
KRH76090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28490.1	KRG97393	AT1G27300.1	21798944
AT1G28490.1	KRH31520	AT1G27300.1	21798944
AT1G28490.1	KRH76090	AT1G27300.1	21798944
AT1G28490.1	KRH09922	AT3G16310.1	21798944
AT1G28490.1	KRH23409	AT3G16310.1	21798944
AT1G28490.1	KRH56393	AT4G26455.1	21798944
AT1G28490.1	KRH62532	AT4G26455.1	21798944
AT1G28490.1	KRH22653	AT5G22290.1	21798944
AT1G28490.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98757	Soybean	cytosol, golgi, nucleus	97.56	97.56
KRH14393	Soybean	cytosol, golgi, nucleus	80.89	82.23
KRH73753	Soybean	cytosol, golgi, nucleus	78.46	79.75
Solyc12g089150.1.1	Tomato	cytosol	38.62	73.64
PGSC0003DMT400039964	Potato	nucleus	70.73	70.45
KRH33360	Soybean	nucleus	37.8	69.4
Bra010866.1-P	Field mustard	cytosol	68.29	68.57
AT1G28490.1	Thale cress	nucleus	68.29	68.57
CDY15661	Canola	cytosol, golgi, nucleus	68.29	68.57
Bra032912.1-P	Field mustard	cytosol, golgi, nucleus	67.89	68.16
CDX94628	Canola	cytosol, golgi, nucleus	67.89	68.16
CDY34096	Canola	cytosol, golgi, nucleus	67.89	68.16
GSMUA_Achr6P18060_001	Banana	cytosol	68.7	67.87
CDY30816	Canola	nucleus	67.48	67.76
EES04275	Sorghum	cytosol	62.6	66.38
Os01t0963300-01	Rice	plasma membrane	61.79	64.96
TraesCS3B01G577200.1	Wheat	cytosol	60.16	63.25
TraesCS3D01G516200.1	Wheat	cytosol	59.76	62.82
EES08039	Sorghum	cytosol, golgi, nucleus	59.76	62.55
Os11t0168100-01	Rice	plasma membrane	59.76	62.55
TraesCS3A01G508800.1	Wheat	cytosol	59.35	62.39
VIT_05s0094g00860.t01	Wine grape	endoplasmic reticulum, vacuole	73.17	61.86
HORVU3Hr1G111910.1	Barley	cytosol	58.94	61.7
GSMUA_Achr10P...	Banana	cytosol	41.46	60.71
GSMUA_Achr6P25690_001	Banana	cytosol, golgi, nucleus	62.6	60.39
TraesCS4A01G208100.1	Wheat	cytosol, golgi, nucleus	57.32	60.0
TraesCS4B01G111700.1	Wheat	cytosol, golgi, nucleus	56.91	59.57
Zm00001d048147_P002	Maize	cytosol	60.98	59.52
TraesCS3A01G508700.1	Wheat	cytosol, golgi, peroxisome	52.44	57.85
Zm00001d042018_P003	Maize	cytosol, golgi, nucleus	62.2	57.52
HORVU4Hr1G019940.1	Barley	cytosol	54.88	51.92
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	9.76	46.15
CDX90156	Canola	cytosol, nucleus, plasma membrane	67.89	37.87
CDY35752	Canola	nucleus	63.41	36.53
KRH25827	Soybean	nucleus	26.83	32.67

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.90	EntrezGene:100787129	MapMan:22.7.4.2	EMBL:ACUP02005327	EMBL:BT097998
UniProt:C6TJZ6	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G316900	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0012505
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0048193
GO:GO:0048278	InterPro:IPR000727	EnsemblPlants:KRH46186	ProteinID:KRH46186	ProteinID:KRH46186.1	PFAM:PF05739
PFAM:PF09177	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF150	SMART:SM00397	InterPro:SNARE
SUPFAM:SSF47661	SUPFAM:SSF58038	InterPro:Syntaxin-6_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0001B1694D
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:43660834..43664847

Molecular Weight (calculated)

27585.6 Da

IEP (calculated)

4.843

GRAVY (calculated)

-0.444

Length

246 amino acids

Sequence
(BLAST)

001: MPSAQDPFYV VKAEIQDSID KLQSTFHQWE SKSGAAEQGH LTKEVLAGCE SIEWQVDELD KAIAVASRDP SWYGIDEAEV ESRRRWASSA RSQVGTMKKA
101: MESGKGSSTT SHASVNGMRR ELMRLPNSHQ TDSSNQYAAR DNDDFIQSES DRQTLLIKRQ DEELDELSES VRRIGGVGLT IHDELTAQEK ILDELGSEMD
201: STTNRLDFVQ KKVAMVMKKA SAKGQIMMIL GLLALFIFLF ILVFFT

Best Arabidopsis Sequence Match ( AT1G28490.1 )
(BLAST)

001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT

Arabidopsis Description

SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.